RNA id: TCONS_00033437


Basic Information

Item Value
RNA id TCONS_00033437
length 1956
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id XLOC_017020
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59075775 ~ 59083614 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTAACTCTGTAGTGTTGTGCTGAGGCTGTGACCTCTGTGTGACCTCCAGATTGAGGTGATGAGCCACAGTCTGCTGACGGACAGAGATTCCACTTCCTGTCCAGCTGCTCAGGGCGGCATGTTCCACTTCCTGTCGAAACTGCGCCGCCATGCCAGCCTGGAGGGAGCCGCTCCGCTGTTCAGCGTCAAGAAGTGGAGACAGGAGACCATGCAGAGAGCGGCCAGCCTGGACACAcgagGTTCTCCTCGGAGGCGAGTGTTTCAGAGGCAGCGGGCAGCCAGCGAGACTCTGGATCAGGGAGCAGAAGAAACCTTGCAGAATGATGGAGTTGATCATTTCCTGATGAGGAAACCCTGCGTTCAGCCGCAGACGGAGCCGCCAAGACGCCTCTCAGCTGGATCTTTAGACACCACTGCCGGAGCTCCGTCTGCCCTCAGcagATTAGAGGTGGAAGCTGTAATGGAGCACACAAACAACACGGACACAAGGGCAAAAGACACACCTCCAGTGTTTTCTTCACTTCACAGACCTCTGGATATGGAGGACGGAGAGGCGGACGGAATGGAGATGGAGGCTGGAGCATCAGGAGGCGGTGGGGAGGAGTTTGTACCCATGGGTCAGTTGGAGAGCCTGGATCAGCCCAGTCTGTACCGTGATATCTGGAGTCTGCGCGCGTCTCTGGAGCAGTATGCTTCCTCAGACTTGAGCAGCAATGACAGAGACTCTACACGCAGCGATGCCGACAGCGTCTGCTCCGCAGGAGCCTCCAGAACAGGCATTCCCAGCTACCAGTCGCAGGACATCGATGATGATTTGGATGGGGAGCTGCCGTATGATGATATGATAAGGGATGTTGGACAGAGAAGAAACGGACGAGAGAGTCTGGACTCTGAAAGAGGCAGCGATGGAGAAACAAACAACCGCAAGCTCCTGCAGATGGACAGTGGCTACGCCTCGATTGAAGCTCCATGCAAAGCTCCAGAGGAACTCAGACTATTCGGAAGCGGCTCTGGAAAGACAGCGTCTGAGCGACGCCGCTTCTTCACCAATTCTGGCCGTAAAGGAACAGTTTGTGAGAGTTTTGAAGCGAGGCTTTTTAAAGAGGAGCTGGAGGATGAGGCAAGTTTGGAGCCAGAGCTTCCAAAGAGCCAAGAGACACAACCGACGACCAAACCTAGGCTACGATTCCGCCGCCGAGACTACAGCATCGATGAGAAGACGGAGGCGCTGTTTAATGAATTTCTAAGACATGATCCCCAGTTTGACCAACAGGGTTCACCCTCATTGCGACACCGGCACCGGTCCCGAATTCATCTCCGAAAGCAGTGGCAGCGCAGCAAACAGTACAGCGACCCAGGAGCCGCTCGATACTCACCGTCCCTAGAGCGCCAGCGCTGCTATCCGCTACGCAGAGGCGACAGTGCCAACTACCCACTGGATACACGATACCACAGTACCTTACCTCGCATCGCTAGTGCAGCAGATGAGGAGGCCAGCGAGGGAGCAACAGGTACAGAAACACCTGAGAATGAAAAAGACAGTCTGGAATCTGGGAATGATGGTCCTCCGCTAGAAGAGCCAAGTTCTGGTCCAGACCTGGAGGAAAACGCaaacaacagcagcaacaactTACACCGACATTTCTTTTCATCGAAATCACAGGACAACACTGCCAGGGATTGTGGGACACCGAAGGACTCTGGAACAACTGTGCATCCCACAGATCCACATACACAGATAATAAGTGTGATTAGTTCACATGTAGATACACTCATACCGGATTCTGCAAACCCGGATCAGGACTATATTCATCACACACTTGCCGACATCAGTCCATCAGACAAACTGCTGTCCACACTGGACGATCAGCTCTACTCTGAGCTGAGGACTCAAAGAGCGAGGGAAGAGTGTGTCGTGACTGTAAGCCGCACTTCACCAGATCTGGAAGACTAA

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034022 lncRNA downstream 150259 58922622 ~ 58925516 (-) True XLOC_017018
TCONS_00034021 lncRNA downstream 187490 58885939 ~ 58888285 (-) False XLOC_017016
TCONS_00034020 lncRNA downstream 210279 58862622 ~ 58865496 (-) True XLOC_017014
TCONS_00034019 lncRNA downstream 211247 58862622 ~ 58864528 (-) False XLOC_017014
TCONS_00034018 lncRNA downstream 211715 58862622 ~ 58864060 (-) False XLOC_017014
TCONS_00033438 lncRNA upstream 2850 59086464 ~ 59089435 (-) True XLOC_017021
TCONS_00034023 lncRNA upstream 9693 59093307 ~ 59102167 (-) False XLOC_017022
TCONS_00034024 lncRNA upstream 9693 59093307 ~ 59103970 (-) False XLOC_017022
TCONS_00034025 lncRNA upstream 9693 59093307 ~ 59116872 (-) False XLOC_017022
TCONS_00034026 lncRNA upstream 9693 59093307 ~ 59120840 (-) False XLOC_017022
TCONS_00033195 mRNA downstream 155800 58914674 ~ 58919975 (-) True XLOC_017017
TCONS_00033191 mRNA downstream 173298 58887599 ~ 58902477 (-) False XLOC_017016
TCONS_00033198 mRNA upstream 52264 59135878 ~ 59145027 (-) True XLOC_017023
TCONS_00033199 mRNA upstream 70974 59154588 ~ 59157790 (-) False XLOC_017024
TCONS_00033200 mRNA upstream 71530 59155144 ~ 59157790 (-) True XLOC_017024
TCONS_00033201 mRNA upstream 91258 59174872 ~ 59178801 (-) False XLOC_017025
TCONS_00033202 mRNA upstream 93568 59177182 ~ 59178742 (-) True XLOC_017025
TCONS_00033196 other downstream 37463 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033190 other downstream 206322 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033188 other downstream 438983 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033170 other downstream 1133912 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 1788517 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033197 other upstream 18555 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 252167 59335781 ~ 59336963 (-) True XLOC_017033
TCONS_00033220 other upstream 298814 59382428 ~ 59390464 (-) True XLOC_017036

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000077_00477638_00489026.mRNA True 2735 mRNA 0.53 7 CI01000077 477638 ~ 489426 (+)