RNA id: TCONS_00034019


Basic Information

Item Value
RNA id TCONS_00034019
length 901
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id XLOC_017014
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58862622 ~ 58865496 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGAGATGGCTCCACTCCTTCATCTGGacccagctgtgtttgattactcTGGTTGGACGTGATCAGCCCCACGTGCACGCGCTTCTGACGTCGGGCGCGCGCACGGGGAGAGCATCAGGAGCGCGCGCGCGGTACCGGAGGAGAGGAGAGGCAGCGGCTGCGAGCGCCGGAACACCGATGACATCAACGAGCAGCAGAACCTCCGGAGGATCCCGGTCATGATGGAGGATCCGCGGCCGAGCTCAGGTGAGCGCGCTGGGTCAGGCGGGATGGGTGGGTCGGTGGAGCTGCTGGGTTCCGCTGGTTATTGTGGCGTTGCGCTGCTCCGCTGTCGGGGATGATGGAGGATCGCTGTTTGTTCTCCGCCTTTGTTCAGAGCCGCTGCCGTTTCTCTCCGGTTTCACACCTGATCCGGTGCAGAGGCGGAGCGCTCGGGCTGACGGCGGACAGCGGGGCTCCGGGGAGCGGGAATATGACGGAAAATCACCGAGCGGCTGCTGCGGGACTCCCGCTCTCCGTCAAACCTTGACTATAACGCGCATCACCTGCAGACCGGGAGCGGGTCGGTGCCGCCGCTCGGTACATCACACAGATCCACAGTAAACagcactgatgatgatgatgatgatgatgatgaagcagGTGGATCTGTGTCGCTCATGTAGAGGAATAACAGCCCGATCTGTCTGATGTGCAGGAGatctgctgatgatgatgatgatgatgatgaagatgatgaagatggtgTGAGATATGCTCGTGTAGATGTGGCGACACTGATGATACAGTCGGTGCTTAAGGTGTTCTTGAGGTGTTTGTTCCGTTAAGCGGCTTCATGCTGTCGGTGATGGAGGCTGTGTGTTATTCAgttctctgacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034016 lncRNA downstream 6739 58851970 ~ 58855883 (-) True XLOC_017013
TCONS_00033436 lncRNA downstream 99337 58758910 ~ 58763285 (-) True XLOC_017011
TCONS_00034015 lncRNA downstream 421127 58436760 ~ 58441495 (-) True XLOC_017006
TCONS_00034014 lncRNA downstream 421764 58436760 ~ 58440858 (-) False XLOC_017006
TCONS_00033182 lncRNA downstream 522105 58291571 ~ 58340517 (-) True XLOC_017003
TCONS_00034021 lncRNA upstream 21411 58885939 ~ 58888285 (-) False XLOC_017016
TCONS_00034022 lncRNA upstream 58094 58922622 ~ 58925516 (-) True XLOC_017018
TCONS_00033437 lncRNA upstream 211247 59075775 ~ 59083614 (-) True XLOC_017020
TCONS_00033438 lncRNA upstream 221936 59086464 ~ 59089435 (-) True XLOC_017021
TCONS_00034023 lncRNA upstream 228779 59093307 ~ 59102167 (-) False XLOC_017022
TCONS_00033189 mRNA downstream 66928 58777364 ~ 58795694 (-) True XLOC_017012
TCONS_00033187 mRNA downstream 221978 58631830 ~ 58640644 (-) True XLOC_017009
TCONS_00033186 mRNA downstream 280959 58513535 ~ 58581663 (-) True XLOC_017008
TCONS_00033185 mRNA downstream 389850 58444873 ~ 58472772 (-) True XLOC_017007
TCONS_00033184 mRNA downstream 444784 58414598 ~ 58417838 (-) True XLOC_017005
TCONS_00033191 mRNA upstream 23071 58887599 ~ 58902477 (-) False XLOC_017016
TCONS_00033192 mRNA upstream 24190 58888718 ~ 58900077 (-) False XLOC_017016
TCONS_00033193 mRNA upstream 27116 58891644 ~ 58900077 (-) False XLOC_017016
TCONS_00033194 mRNA upstream 32455 58896983 ~ 58902477 (-) True XLOC_017016
TCONS_00033195 mRNA upstream 50146 58914674 ~ 58919975 (-) True XLOC_017017
TCONS_00033188 other downstream 225830 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033170 other downstream 920759 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 1575364 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 1593464 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 1759137 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033190 other upstream 3581 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 173667 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 237641 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 471253 59335781 ~ 59336963 (-) True XLOC_017033
TCONS_00033220 other upstream 517900 59382428 ~ 59390464 (-) True XLOC_017036