Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00033202 |
| length | 816 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 2 |
| gene id | XLOC_017025 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 59174872 ~ 59178801 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-105 | Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in chromatin and nucleoplasm. |
| ensembl_id | ENSDART00000170594 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00034026 | lncRNA | downstream | 56342 | 59093307 ~ 59120840 (-) | False | XLOC_017022 |
| TCONS_00033439 | lncRNA | downstream | 60208 | 59094437 ~ 59116974 (-) | False | XLOC_017022 |
| TCONS_00034025 | lncRNA | downstream | 60310 | 59093307 ~ 59116872 (-) | False | XLOC_017022 |
| TCONS_00034024 | lncRNA | downstream | 73212 | 59093307 ~ 59103970 (-) | False | XLOC_017022 |
| TCONS_00034023 | lncRNA | downstream | 75015 | 59093307 ~ 59102167 (-) | False | XLOC_017022 |
| TCONS_00034027 | lncRNA | upstream | 200424 | 59379166 ~ 59390269 (-) | False | XLOC_017036 |
| TCONS_00034029 | lncRNA | upstream | 200424 | 59379166 ~ 59390464 (-) | False | XLOC_017036 |
| TCONS_00034028 | lncRNA | upstream | 200424 | 59379166 ~ 59390464 (-) | False | XLOC_017036 |
| TCONS_00033199 | mRNA | downstream | 19392 | 59154588 ~ 59157790 (-) | False | XLOC_017024 |
| TCONS_00033200 | mRNA | downstream | 19392 | 59155144 ~ 59157790 (-) | True | XLOC_017024 |
| TCONS_00033198 | mRNA | downstream | 32155 | 59135878 ~ 59145027 (-) | True | XLOC_017023 |
| TCONS_00033195 | mRNA | downstream | 257207 | 58914674 ~ 58919975 (-) | True | XLOC_017017 |
| TCONS_00033194 | mRNA | downstream | 274705 | 58896983 ~ 58902477 (-) | True | XLOC_017016 |
| TCONS_00033203 | mRNA | upstream | 11924 | 59190666 ~ 59205441 (-) | False | XLOC_017026 |
| TCONS_00033204 | mRNA | upstream | 24013 | 59202755 ~ 59205393 (-) | False | XLOC_017026 |
| TCONS_00033205 | mRNA | upstream | 25344 | 59204086 ~ 59205393 (-) | True | XLOC_017026 |
| TCONS_00033206 | mRNA | upstream | 43206 | 59221948 ~ 59231017 (-) | False | XLOC_017027 |
| TCONS_00033207 | mRNA | upstream | 48804 | 59227546 ~ 59231111 (-) | True | XLOC_017027 |
| TCONS_00033197 | other | downstream | 74930 | 59102169 ~ 59102252 (-) | True | XLOC_017022 |
| TCONS_00033196 | other | downstream | 138870 | 59038195 ~ 59038312 (-) | True | XLOC_017019 |
| TCONS_00033190 | other | downstream | 307729 | 58868109 ~ 58869453 (-) | True | XLOC_017015 |
| TCONS_00033188 | other | downstream | 540390 | 58636676 ~ 58636792 (-) | True | XLOC_017010 |
| TCONS_00033170 | other | downstream | 1235319 | 57940680 ~ 57941863 (-) | True | XLOC_016993 |
| TCONS_00033216 | other | upstream | 157039 | 59335781 ~ 59336963 (-) | True | XLOC_017033 |
| TCONS_00033220 | other | upstream | 203686 | 59382428 ~ 59390464 (-) | True | XLOC_017036 |
