RNA id: TCONS_00034966


Basic Information

Item Value
RNA id TCONS_00034966
length 996
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_017636
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46274118 ~ 46281497 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atGAATCTTACAGCAGTGAACCAAACTGATATGTGTGAGGACTACTCGTGTCCAGAGAGATCTGTTTCTTTATCTGTCTATGTGATTCTGTATGTGGCCGCAGCAGCTGTGGCTCTTCTGACCGTGTGTGGAAACCTGCTGGTCATGATCTCTGTTAGTCACTTCAAGCAGCTCCACACACCTGCCAACATCCTCATCCTCTCTTTGGCTGCGTCTGATCTGCTGGTGGGAGTTTTTGTGATACCACTTCATTTGTCTTTGCTCATTGAATCATGCTGGATCTCTGGTCCGGTCATGTGCTCGATTTTTAAATTTGTGAACTTTCAGCCAACAAGTGTTTCTGTTCACACTGTGGCTTTAATAGCTGTCGATCGCTTTTTGGCTTTGAGTTTTCCCTTTTTTTACTCTGAGAAAATCTCACTCAATGTCGTCTGTACAGCAGCTTTGCTAAACTGGTTGTTTTCACTCATTTATAACTTCACTCTCTTTTATATTAATGGAAATTTCACTGACAGCGTGTGTCCAGGAGAGTGTGTTTATAATATCGACGGGACTTCATCAATTATTGATCTCCTGATTGTGTTTGTAATGCCATGTACGctcattataatattatacacTCATGTTTTTGTCATTGCTAAGAAACATGCGACTGCTATAAGAGCCCTTCAGGTTCACAACAGCACAGAATCCTCTAAGAACAAAATCAGCGACAAATCAGAGAGAAAAGCTGCGATGCTGCTGGGGATTCTGGTCTTTaaagcgttacctgTGTTTCTCCTCTGTTTGCTGCCgtattatattacttttttagtgATACCATATGGCAGTGTTATAAATTTTGTCAGAGATGTTGCTGTAATATTTTTCTTCCTGAACTCCACCATTAATCCCATCATTTACGCTTTATTCTATTCCTGGTTTAAGAAAAGCTTAAAATTGATTTTCACATTTAAAGTCTTTCATAAAGACTCCTCGCTGATGAATGTGATGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100510-1 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in schizophrenia and schizophrenia 5. Orthologous to human TAAR6 (trace amine associated receptor 6); TAAR8 (trace amine associated receptor 8); and TAAR9 (trace amine associated receptor 9).

Ensembl:

ensembl_id ENSDART00000124961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036688 lncRNA upstream 230713 46039591 ~ 46043405 (+) False XLOC_017620
TCONS_00034949 lncRNA upstream 230713 46040712 ~ 46043405 (+) True XLOC_017620
TCONS_00036686 lncRNA upstream 277686 45987943 ~ 45996432 (+) False XLOC_017619
TCONS_00036689 lncRNA downstream 70416 46351913 ~ 46357028 (+) True XLOC_017642
TCONS_00036690 lncRNA downstream 80954 46362451 ~ 46367708 (+) False XLOC_017643
TCONS_00036691 lncRNA downstream 81177 46362674 ~ 46367708 (+) True XLOC_017643
TCONS_00036692 lncRNA downstream 86949 46368446 ~ 46371615 (+) False XLOC_017644
TCONS_00036693 lncRNA downstream 121361 46402858 ~ 46414431 (+) True XLOC_017644
TCONS_00034965 mRNA upstream 4055 46268906 ~ 46270063 (+) True XLOC_017635
TCONS_00034964 mRNA upstream 12465 46260580 ~ 46261653 (+) True XLOC_017634
TCONS_00034963 mRNA upstream 18102 46255057 ~ 46256016 (+) True XLOC_017633
TCONS_00034962 mRNA upstream 22038 46250944 ~ 46252080 (+) True XLOC_017632
TCONS_00034961 mRNA upstream 27711 46245450 ~ 46246407 (+) True XLOC_017631
TCONS_00034968 mRNA downstream 4585 46286082 ~ 46287334 (+) True XLOC_017638
TCONS_00034969 mRNA downstream 9638 46291135 ~ 46292527 (+) True XLOC_017639
TCONS_00034970 mRNA downstream 22426 46303923 ~ 46305446 (+) True XLOC_017640
TCONS_00034971 mRNA downstream 29745 46311242 ~ 46349064 (+) False XLOC_017641
TCONS_00034972 mRNA downstream 30210 46311707 ~ 46339740 (+) True XLOC_017641
TCONS_00034947 other upstream 232751 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034940 other upstream 1338963 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034931 other upstream 2075303 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034930 other upstream 2134257 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034912 other upstream 3264505 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034979 other downstream 161083 46442580 ~ 46494784 (+) False XLOC_017646
TCONS_00034980 other downstream 175547 46457044 ~ 46494690 (+) False XLOC_017646
TCONS_00034982 other downstream 227048 46508545 ~ 46513858 (+) False XLOC_017646
TCONS_00035004 other downstream 823213 47104710 ~ 47104873 (+) True XLOC_017657
TCONS_00035005 other downstream 824597 47106094 ~ 47106257 (+) True XLOC_017658