RNA id: TCONS_00034971


Basic Information

Item Value
RNA id TCONS_00034971
length 2505
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_017641
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46311242 ~ 46349064 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGGGCGCGCAAAATGTTTGTGTGGCTTAATTTTTCACAACATGTGCTGCACACGAGCTCGAGAGTGTCACATGACTGACAACAGTTTTACAGTTAAAGTACGCCCATTTCTGAGTACAGATAGTTTGTGTGATTTCTCCTCTAGTCGTTTATTTCTCCACTGGAGCTTCATCACGGTGGCGAAACTTTTAACGGGTGTTTGAGGAGTCTCTGCTGCGGGAGCCGGACGCTTTATTGAAACTAAGCAGCAAATCTGTCATATTAAAATGGCAAGTTTATTAACTGGTGTTTAAACTCAAACgtttttatatgatatttatttaaaagttagtatttatttataacatagtTTGACATGTTGTTCAGTGAGTTCCTCTAGATTGACTGACAGGCTCCTCAACATGACATTTGGGATTCATTATGAATGAATGGACACTCGTTTTAACGACATAAACCGGGTGAAAATGGGCGATGAGTCGAAGTCAGTGGACGGAGAGGTGAATGACAATACATATTACTCAAAAACTGATGCTGAGGTGAATTTTGAACATCGCTACACAACGCCAGAAACGCGTTTGTATAAAAAGAGATGGGTCATAGTGTGTTTATTCAGCTCATATTCGCTCTGCAACTCCTATCAATGGATTCAGTACGGAATCATCAACAACATCTTCATGCGCTTCTACGGCGTGGACTCTTTCACCATAGACTGGATGTCCATGATTTACATGTTGACATACATTCCGCTCATTTTCCCCGTTTCGTGGCTACTGGATAAAAAGGGTCTGAGGGTCATCGCGCTCGTGGCCGCGGCTCTGAATTGCGCGGGCACGTGGATCAAGGTGGCCAGCGCCAGACCGGACCTTTTCCCGGTGACATTTCTCGGTCAGTTCACGTGCTCCGTTGCTCAGGTGTTTATATTGGGGATGCCCTCGCGGATCGCATCGGTGTGGTTCGGGTCGGATGAGGTGTCCACAGCGTGCTCCATTGGAGTCttcggaaatcagtTGGGCATCGCCATTGGCTTCCTCGTTCCACCCATACTTGTTCCCAATGTGGACGATCTGGATGAGCTGGCGGCTCATATCAGAGTCATGTTCTACATCACCGCAGGTGTGGCCACATTCCTGTTCGTGCTGGTTGTCATTGtgtttcaGGAGCGTCCGGAGATTCCTCCCACTCTCGCTCAGGCTGCTGCTCGACGCATTTCTCCAGAGAGCTACTCGTACACGGCCTCCATCCTCAGACTGCTACGCAACAAAGCCTTTATCCTCCTCGTCATCACTTACGGGCTGAATGTTGGCTGTTTCTATGCTGTCAGTACACTTCTCAACCGGATGATCATTGAACACTATCCTGGCGAGGAGGTGAATGCCGGCAGGATAGGCCTCACCATCGTGATCGCTGGCATGGTGGGTTCCCTAATCTGTGGCATCTGGCTAGACCGATCGAAAACCTACAAACAAACCACTCTAGCGGTGTATCTGATGTCCCTCGTGGGTTTGGTGATTTATGCTTTTACTCTGGATTTGCATCACCTGTGGGTGGTTTTCATCACAGCAGGAGCCCTCGGGTTCTTCATGACGGGTTATCTTCCTCTCGGCTTTGAGTTTGCTGTTGAATTGACGTACCCAGAGTCTGAAGGCACGTCTTCAGGGCTACTGAACTGCTCAGCACAGGTGTTTGGGATCATATTTACAATCTGTCAGGGGAAAATCATGGACTCCTTCGGTACACTGGCTGGAAATCTGTTCCTGTGTGCCTTTTTGCTGATAGGAACCATTATAACAGGCTGTATAAAGTCAGATCTGCGCAGACAGCTGGCAAACCAGCAAGCACAAACTGCTGCTGCTCTGGGCAGGTCATACGTTCAGGATCACAGCGGGACGACTCTCCTTCCCTCCACACACATGTGATCAATCAATCACTGCCTGCTTTTATTGCTCACTGAGGTTCAGgACCATTTGGACACATCGCCAACACAAACAAGATTTTGAAGCCAAACAAAAAGCAGTGATCATGGAACGGATCATGTAGCATTACTTGtgacattttcttttttagtttGTAACCGGCCTTGAATTTCAATCGATTTGGACATTTTCTTTGTGCTATATatgtgattgtttttgttttgttttgtacgtTTTTAACTGCCATGGACTGATTGAGTATTTGTTTGTGTGAGCATTTGTGTTTACTTGATCAATAATCATCTCAGATTTTAGGATATATTctaatttttaacttttataaatTGGTGATTTAAATTATTCATCTTAACATTTTTCTTCTCACAATTTGTATAGACGTTTATATAAAAGATAAGAAAATAATAAGATGAAGCCCTTAAGTATGTGAGATTCATCAGTATTATGCAGTAGATATATGATaacattgttttgtttgatacagCTGTGTTGTAGTTCATTTAAAGTCATGTTAGTCCATCTAAACCAACTCCAATCAATAAaactaaaactccacatttattatttaaagca

Function

GO:

id name namespace
GO:0097037 heme export biological_process
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015232 heme transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-312 Predicted to enable heme binding activity and heme transmembrane transporter activity. Predicted to be involved in heme export. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome. Orthologous to human FLVCR2 (FLVCR heme transporter 2).

Ensembl:

ensembl_id ENSDART00000038696

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034967 lncRNA upstream 31764 46277906 ~ 46279478 (+) True XLOC_017637
TCONS_00036688 lncRNA upstream 267837 46039591 ~ 46043405 (+) False XLOC_017620
TCONS_00034949 lncRNA upstream 267837 46040712 ~ 46043405 (+) True XLOC_017620
TCONS_00036687 lncRNA upstream 314810 45989209 ~ 45996432 (+) True XLOC_017619
TCONS_00034946 lncRNA upstream 314812 45989179 ~ 45996430 (+) False XLOC_017619
TCONS_00036689 lncRNA downstream 2849 46351913 ~ 46357028 (+) True XLOC_017642
TCONS_00036690 lncRNA downstream 13387 46362451 ~ 46367708 (+) False XLOC_017643
TCONS_00036691 lncRNA downstream 13610 46362674 ~ 46367708 (+) True XLOC_017643
TCONS_00036692 lncRNA downstream 19382 46368446 ~ 46371615 (+) False XLOC_017644
TCONS_00036693 lncRNA downstream 53794 46402858 ~ 46414431 (+) True XLOC_017644
TCONS_00034970 mRNA upstream 5796 46303923 ~ 46305446 (+) True XLOC_017640
TCONS_00034969 mRNA upstream 18715 46291135 ~ 46292527 (+) True XLOC_017639
TCONS_00034968 mRNA upstream 23908 46286082 ~ 46287334 (+) True XLOC_017638
TCONS_00034966 mRNA upstream 29745 46274118 ~ 46281497 (+) True XLOC_017636
TCONS_00034965 mRNA upstream 41179 46268906 ~ 46270063 (+) True XLOC_017635
TCONS_00034973 mRNA downstream 22394 46371458 ~ 46386146 (+) False XLOC_017644
TCONS_00034974 mRNA downstream 36843 46385907 ~ 46423475 (+) False XLOC_017644
TCONS_00034976 mRNA downstream 78920 46427984 ~ 46442137 (+) False XLOC_017645
TCONS_00034977 mRNA downstream 79001 46428065 ~ 46430796 (+) False XLOC_017645
TCONS_00034978 mRNA downstream 85240 46434304 ~ 46441679 (+) True XLOC_017645
TCONS_00034947 other upstream 269875 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034940 other upstream 1376087 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034931 other upstream 2112427 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034930 other upstream 2171381 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034912 other upstream 3301629 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034979 other downstream 93516 46442580 ~ 46494784 (+) False XLOC_017646
TCONS_00034980 other downstream 107980 46457044 ~ 46494690 (+) False XLOC_017646
TCONS_00034982 other downstream 159481 46508545 ~ 46513858 (+) False XLOC_017646
TCONS_00035004 other downstream 755646 47104710 ~ 47104873 (+) True XLOC_017657
TCONS_00035005 other downstream 757030 47106094 ~ 47106257 (+) True XLOC_017658

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_05341656_05353379.mRNA True 2219 mRNA 0.44 9 CI01000029 5340829 ~ 5353379 (+)