RNA id: TCONS_00035077


Basic Information

Item Value
RNA id TCONS_00035077
length 1934
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_017726
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 51813432 ~ 51874288 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTAATGAACACACACAACTCCGTTTATATTAGCAAATTTAGCCGTCTCGGGATATTATGCGACCCCTAAATGGACTTTACCAACTGCAACAGAATTACTATGAAGACCCCAATGAGGAggatttaaaaaatacaacactGCGACCTAATTACACAATTCTGCACGGATATTAGACGGAAATTGTTAATTCTGAACAGTTTAAGCTAGCATAAATCAAACAATTGACTCCTGAAGGCAGCATTTTGAGTCTAAAGGGCACTTACTTCGTGAAGTCTGGACAGGATGAAGACGAAAAAGGCAGTGTTTTCTATCTCAGCTGGTTGAGAGGAAGGCCAGTCGCCGTATTGCACTGAGAAATGGATGACATCGAAGCTGAGCTCAACATTGCAGAAACACACGCGGATTTTACACAAGATGAAAGTGAACATCGGCAACGGCTGAAAAGACCAGTCCAGCTTCACTGTCAAGTTAAAGACCGAGGTTTTTTCACAGGGATCTACTTTCTGAAGTGCAACAGAAAGTGTCTGGAGCTGCTGAGAGAAGCGATGCTGCATCATCGGTGGCAGGAGGCTGTGGGATATTTCAGCTCTTACATTCAGACACTGGAGGCCAAAACATACAATAGTTATCAGTCTGTGGTTGCGGAgatcttgtggagattgggcacaGAAATCCTGCATCATCTCCCAAACACTAGCAATGAAGATTTCAACGCTTTATATGAACAGCTGAAGAACGTCGGGGTCCTCAACTTCTCAAAGATTAGTCTGGAGCACTGCTATCATCTCCTGCTgaacggacagatggatgaagcCAAACGGCAGCTTTCCATCGCAGAGAGCTGGAGATATGGAAGGGTATCCCGATCTCAATCACTGAGCAAAACGCTGATCACAGCCTACTGCGGCTTACTGGATTACTTGATCTGGAACGAGAAGAAGTCCTCTGTGTCTGAAAACGAGGAGCTGAGCAGTAATCATGAGATGCACAGTTACTTCAGACAGGCGTCAGTGACTCTGAAGGACATCATCAGTCTGCCTGGAATCTGGGACCCGTTTGTGCTGAGCTACGTTAATATGTTGGAGTTTTATAAGCAGGAGGAGAGCGCTCTGCAGGCTTTGGAGAATTACGCATACAACAAGGAGTTTCCATCGAACCCAAACGCTCATGTTTATCTGTACCAGTTCCTGAAGAGACACGACGCTCCAAGGGAAAAGCTCATCAGCACATTGAGGATTCTGCACTCTTTAGTCCCGAGTCATGAGCTGATGCTGGAGCTCTGCAATCTCCTGCTGGATACATTGGAAAGGAGTGACACTGAAGAAGCTCTCGCTGTTTGTATGGACCTTCTGGAGTTTTCCAGCTGGAAAACTGATATTAGGGCTTGGGACTGCCTTTTGACATGTTTGAAGAAAATTAGAAAGAAGAAGTGGCAGGAGATTATACAGAAGGAGTGGAAGGTGCGGCGTTCGCTCTGGGTACCTTTACACTTCAGAGACTTCCTCAGCCTCAAAGACTGGATGGACAACCATAAACTTATGATGATCATCAAGAAGGACTGTCTGAGGATCATCAATGAAAACATGAGAGAATACTGTCGAGTCGCTGCAATCGCTGAGAAAGAAGTCCTCCTGCAGATAAGGATGAAACGAAAAAAGAAGCAGCACAAAATACAGACGGCCATTACTGAACTGACAAACTGAGGCGCTCTACATGTGAAGAGGATTTCCATTTAAACAGGTTTACTCCCTTTTGTACAGTAAAGaaagtttttttacagtatatgttcTTGAATATGCCAGAGTAAACACGTACTTTGTTTTATAAAAAGAATTCACCCAATATTGGGTTACATTAACCCAGCATCTGTGTATATCCTCACACTGTATATAAACGAGTGACTGTCTGCTGATTAAAGTCCTGTAAATGCAG

Function

GO:

id name namespace
GO:0006360 transcription by RNA polymerase I biological_process
GO:0060047 heart contraction biological_process
GO:0000120 RNA polymerase I transcription regulator complex cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-041014-272 Acts upstream of or within heart contraction. Predicted to be part of RNA polymerase I transcription regulator complex. Orthologous to human TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A).

Ensembl:

ensembl_id ENSDART00000127444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036749 lncRNA upstream 146235 51647594 ~ 51667197 (+) False XLOC_017724
TCONS_00036750 lncRNA upstream 146235 51647640 ~ 51667197 (+) True XLOC_017724
TCONS_00036748 lncRNA upstream 330749 51481968 ~ 51482683 (+) True XLOC_017722
TCONS_00036746 lncRNA upstream 404400 51407354 ~ 51409032 (+) False XLOC_017720
TCONS_00036430 lncRNA downstream 61015 51935303 ~ 52016412 (+) False XLOC_017727
TCONS_00036431 lncRNA downstream 94159 51968447 ~ 51977873 (+) False XLOC_017727
TCONS_00036432 lncRNA downstream 121813 51996101 ~ 52061098 (+) False XLOC_017727
TCONS_00036751 lncRNA downstream 124964 51999252 ~ 52016412 (+) False XLOC_017727
TCONS_00036433 lncRNA downstream 141370 52015658 ~ 52041094 (+) True XLOC_017727
TCONS_00035076 mRNA upstream 59547 51730658 ~ 51753885 (+) True XLOC_017725
TCONS_00035074 mRNA upstream 330841 51479263 ~ 51482591 (+) False XLOC_017722
TCONS_00035073 mRNA upstream 333168 51478939 ~ 51480264 (+) False XLOC_017722
TCONS_00035072 mRNA upstream 336583 51471921 ~ 51476849 (+) True XLOC_017721
TCONS_00035071 mRNA upstream 337278 51466046 ~ 51476154 (+) False XLOC_017721
TCONS_00035084 mRNA downstream 515570 52389858 ~ 52447533 (+) False XLOC_017733
TCONS_00035083 mRNA downstream 515570 52389858 ~ 52447533 (+) False XLOC_017733
TCONS_00035085 mRNA downstream 568582 52442870 ~ 52447533 (+) True XLOC_017733
TCONS_00035086 mRNA downstream 584477 52458765 ~ 52488233 (+) True XLOC_017734
TCONS_00035087 mRNA downstream 617904 52492192 ~ 52525680 (+) True XLOC_017735
TCONS_00035075 other upstream 297114 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035066 other upstream 601384 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035033 other upstream 2780314 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 3199996 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035022 other upstream 3201062 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035099 other downstream 1045568 52919856 ~ 52919986 (+) True XLOC_017742

Expression Profile

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