RNA id: TCONS_00005787


Basic Information

Item Value
RNA id TCONS_00005787
length 3763
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id XLOC_001767
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 121898 ~ 133969 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacacacagagagagagacggaACACAAGTGAATATTCAGATATGGTTTATTTATGAGCTTCTTGCGACAGAGTAATCATCTAAATCAACAAGAAAATCAGAATGAGTCGCTTGTCGTATGCGCGCTGAATCTGTTTAAACACCGTGTGTAATGTGCCGTATTATGGCTTGTGGAATAAGCTTTAAAGACGGATCTGAAGACGATATAATGTGGGTATTCCTGATTTCATATTTCCCCAACTCAACAGAGATGAAGAAAGGAAAGCCTCTGACGTGACGTGACGTGATGGCTTCGTATCAGCAGGGCACTTTAAAGGGCACTTCATCAATCGTGGAGCGCTGGAGCGATGCGCTGTCACTGTGCAGAATCAGCGGAGGACTCCAGTCTCAACCGGGCACAGATGTGCGGATCTACAGACACATCGGCCAGACTCAAGAACACACGGCCATAAGAGGGATGTCTGTGAGTCCTGGTCCTGTAAATCCCTTGAACACGATACAGCGCAATCTGAGCTCTGGCAAATGTAAGTTCAAGTCCAGAGTATACTtcatgttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcacttTTGAGCTGTGGAAAGGTCTTCATCCTGAACACAACACTCTTTTAGTCTTCAGTAGTTTGCTGTTGTTGTTCAGTGAATCAGTCGCTCAGTGATGACCCCTTGTGGACAAACTAATAAGTGCAAAAAATCAAATGGGCATGTGCAAGTGCAATATAGTTCTGAAGTGTTCTGATGAAGTGGTGTACTGAGCTCTGCACGCCTAATTAACAGCAGAAGTATACTCTGGGCTTTAGTATTGAACAGACTTGTTATGGAGCGTTCTCTTGATGCATGCATTATCTTATTTGATGCAAATGAAAACAAGGCTGCTGAACAAACCCCTTAACCTGCTGCCATTGTCCATCTGCAAATCACTGCAACAACACTGAACAGAGCAGCCGGACGCAAACCATCGAGGATTGGAAAGTGGCGATTCCACTGATCCAAGATGGAAAAACGtcttgcaattctgagtgtgctcctcacaggtgagtgggcttgacaaaccacctgtagtacACACTCTTTCCAATCTGTTTGCTTGAATGTGGAAAAACAATCGTAAACTGCTTCAGCAGGAGGTAAAGTGCTTCTCTTGTCTCACTTGTGGGTCACTTCGGATGAAAGCGTCTGTTAAAAAGTGAACGATCCCGCATTACTGTCCGCCACTGAAGCCCTGTGGACGGCTCTGGATCTTCAGCTCTGCTAGATATATTCTGCAGGAGTTCCTCAGGGGTCAGTTCTTGGACCTCTCCTCTTCCTAATTTACACCACATCACTGGGAGCCATCGTCTGATGACATAGTGTTTCTCCTGTAATCAACTGCACATAGTGTTGTCAGAAATACTGATTTCAGTACTGAATagtaattaaattttataaacGTCCATTTCCCTCAAACACCTGAGCTCTTAAACACTGTGGATGATCATTGGAGCCAATCAGAGTTTATTTCTGCTGAGCGTGTGAACACAATTAGGGTTAGGGTTCTGTGGAAACAAGGCATAAATCAATTTCCAGAACATTTTCCTTCACGGTTCCTCACTGGTGGAATGATCTCCCCAATCCCAAACAGAAAACTGAAGCTCATCTCCTCTGTGAAGGTGTTTCCTCTCTCCTCATCTACTCTAGCCTGTATTGCTGGCTCTTCCTGGGAGCACTGCGTCTTTAAGATCAGCCGCTTGGTGCTTTTCTCGTTTGTAAgtggctttggataaaagcatctgctaaatgtaatGCTATGATGATCGCTCATCTGTGATTATCACTCCGCCGTAAACGACCATGATGTGAACACGCCAGAGGAAACGGGAAAGACTGCCCTGGCATTGCTTTATTAAACTCAATGCAGATCTGAGACTGTGAGCGCTCTAGTGAGCTGGTCAGCGAGCGTCCGTCTGTCAGCTGTATGAAGTCTTGTCAGACTCTTTCACTACTTGACTGTCTGGCGACAGCACTTCCAGACGGCTCACACAGACGGGTCGAGATATTTAAGCTGGTTTACATCTCTCTCTCTGCATCTGCTTCTCTCATTAATTATTTAAGCACAGCGGTGGTCCCTCATGTGGGTTGTGCCTCCAGGACGACGCCCCGTCTCAGCCTTGTTTTCATTGGCAATGCTCATGTGCTGATCAATGTCGAGGCAAAGGTGACGTGAGGGTTCGGCTCTTTGGTCTCGTGTGCGCGCGGTGTTTATCTCGTGGTCAAACACACACATCTGCTGCTCTGTCTgacgacacaaacacacacagaagcgCTCGGCTGCATCGGGCGCGCTGAAGTTCAAATCCAGTTATGACTTAAAGGAAGAGAGAAAGATCATGGCCTGATGACGGTACGGAAGGTTATTGGAGCAGACATGCACGattacacgcgcacacacacacacacacacacactcacacaccatcATCAGCCCCACAATCCCATGCAACGCAACCGCACCGCCTTCAGCCTCCGGTTTGCATCCAGTACGGGGATCTCCTGCATGTATGGCCGACAGTACTTTAAATATGTACATCAGAGTCGCAGGACTACAGGGATCGAGTGTTCATGCGTGGATAAATATGTCTGCTGCTCTTCCAGAAGGCAGAATATACAGACGTGGAGCGACTCGTGTCGTATCAAACAACCTTACATCTCAAACCAAacgcagatatatatatatatatacaaaaaaatacaaatgcaaatgcCCTAGAATAGATCTATATATATGCTCATATACATATAGAGGTCTTCATCTCTGAATTACAAATCTGAAAATATCATTTCATatctttaagaaaaaaactgGTCTCTGAAACCATGCAGTGGCCCGCCAGTTCACCTGCGTCACGCCCTGGAGCCAGAAAAAGAGAAGTGCGTGTGATGGGGGCGTCCGTGACCTCGGCCCGCCTCGGGGCGCATTCCTgagctgacctctgacctctgagCCCAGCCAATGGTGCGGCGGCAGTGGCGCAGAGATCAGGAGAGATTCTCCCGTCCTCCTACACTTTGGACTCGCTCTCCATGTTGGCGACGTCTCCGTTCCTCTCCGTCAGCTCCTCCGGCGGCTCCTGCGGCTCCAGCTGGCTCAGTTTGCTGGCCACCGACCAGGTGAGCGGCAGGCGGGCGCGCGCCGTCATCTCGGCCAGCTCTCGCGCGCTGCAGCTGGGCGTGTTGGTCTCGTAGATCTCGTGGAAGCTGTTGTAGTCCACCTCGTAGAAGCCGTCCTCCAGCGTCAGCACTGGCGTGAAGCGGTAACCCCACTTGATCTCGCTGGCCACGTATGAGCTGCGCGCCTGACACGTCATGCCTGAGGGAGGAAACCCAGAGCCCAAGCCTGAAGCTGAGAGCTGGGTCCAGCAGGCGACGTGCGGCTGACCTCTCTGTGTCCTGTACTGCACTCCTGAGGGATTCTGGGAGACTTATTTCCCAGCATTTACAGCTGTGTATTGATCCTGAGCTATATTTGAGCTGTGGGTCCTGATAGGAGCGGGCTCCTGTTTCTCTGGGTGAAGCTCAGACTGTGCTGGAGGTGAAAATACCCTCATCATCCACTCGCTGCAAACAGTATATTCAAGTTTTGCAGGTTTGAAGAGGCATGagcttgagtaaatgatgaccagaCGCACATGCATGAACACTAACTGTGGCTTTAAGATCATCTGCtc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005786 lncRNA upstream 62150 58893 ~ 59748 (+) True XLOC_001764
TCONS_00005785 lncRNA upstream 91060 30360 ~ 30838 (+) True XLOC_001763
TCONS_00003567 lncRNA downstream 53850 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005789 lncRNA downstream 53850 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA downstream 56574 190543 ~ 193882 (+) True XLOC_001769
TCONS_00005790 lncRNA downstream 148355 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005661 lncRNA downstream 264375 398344 ~ 398759 (+) True XLOC_001776
TCONS_00003562 mRNA upstream 5862 110879 ~ 116036 (+) False XLOC_001766
TCONS_00003563 mRNA upstream 5869 111023 ~ 116029 (+) True XLOC_001766
TCONS_00003561 mRNA upstream 10770 110868 ~ 111128 (+) False XLOC_001766
TCONS_00003560 mRNA upstream 40193 76864 ~ 81705 (+) True XLOC_001765
TCONS_00003559 mRNA upstream 93700 23088 ~ 28198 (+) True XLOC_001762
TCONS_00003564 mRNA downstream 24621 158590 ~ 159597 (+) True XLOC_001768
TCONS_00003565 mRNA downstream 53791 187760 ~ 196815 (+) False XLOC_001769
TCONS_00003566 mRNA downstream 53795 187764 ~ 190972 (+) False XLOC_001769
TCONS_00003570 mRNA downstream 79909 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003571 mRNA downstream 79968 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003569 other downstream 77813 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 372594 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 671275 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1530953 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 2041614 2175583 ~ 2267357 (+) False XLOC_001805

Expression Profile

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