RNA id: TU760817


Basic Information

Item Value
RNA id TU760817
length 901
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G668025
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 6070357 ~ 6073721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccccggtaggctaaAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGGAAAAGAAGAAGGGATCTCTGAGGATGACAGAAAACTATATCCTCGCAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAGGATGGGTTCTCTGAGAATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAATAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCGTAAGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGATGAAGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGATGAAGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAAGAAGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAAGAAGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCGGAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCAGAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATCCTCGGAGGGCTAAAGAAAAGAAGATGGGATCTCTGAGGATGACAGAAAACTATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760787 lncRNA downstream 28634 6040942 ~ 6041723 (-) True G668000
TU760786 lncRNA downstream 28842 6040942 ~ 6041515 (-) False G668000
TU760760 lncRNA downstream 69296 6000170 ~ 6001061 (-) True G667974
TU760759 lncRNA downstream 70208 5999284 ~ 6000149 (-) True G667973
TU760756 lncRNA downstream 72350 5997578 ~ 5998007 (-) True G667971
TU761028 lncRNA upstream 166317 6240038 ~ 6244253 (-) True G668212
TU761136 lncRNA upstream 247064 6320785 ~ 6321033 (-) True G668304
TU761141 lncRNA upstream 253218 6326939 ~ 6327226 (-) True G668309
TU761148 lncRNA upstream 261915 6335636 ~ 6336217 (-) True G668315
TU761155 lncRNA upstream 282558 6356279 ~ 6356548 (-) True G668320
XM_021611414.2 mRNA downstream 25431 5938942 ~ 6044926 (-) False LOC110529295
XM_036984625.1 mRNA downstream 330786 5649496 ~ 5739571 (-) True LOC110529170
XM_036986817.1 mRNA downstream 359236 5710145 ~ 5711121 (-) True LOC118965593
XM_036984624.1 mRNA downstream 400408 5649496 ~ 5669949 (-) False LOC110529170
XM_036986816.1 mRNA downstream 483722 5583845 ~ 5586635 (-) False si:dkey-229d11.5
XM_021611408.2 mRNA upstream 622261 6695982 ~ 6717482 (-) False LOC110529288
XM_021611407.2 mRNA upstream 622261 6695982 ~ 6717783 (-) True LOC110529288
LOC118965487 mRNA upstream 685679 6759400 ~ 6761544 (-) False LOC118965487
XM_036984634.1 mRNA upstream 712656 6786377 ~ 6800030 (-) False wdr21
XM_036984632.1 mRNA upstream 712656 6786377 ~ 6801226 (-) False wdr21
TU760267 other downstream 519112 5548803 ~ 5551245 (-) True znf395b
TU759716 other downstream 1580137 4488806 ~ 4490220 (-) True G667122
TU758186 other downstream 2400210 3668232 ~ 3670147 (-) True G665927
TU758017 other downstream 2548734 3520790 ~ 3521623 (-) True G665797
TU757924 other downstream 2652069 3417113 ~ 3418288 (-) True G665718
TU761008 other upstream 132837 6206558 ~ 6284021 (-) True G668192
TU761057 other upstream 206475 6280196 ~ 6281640 (-) True G668238
TU761993 other upstream 712811 6786532 ~ 6794187 (-) True wdr21
TU762099 other upstream 916129 6989850 ~ 6991612 (-) False G669087
TU762102 other upstream 916129 6989850 ~ 6991612 (-) False G669087

Expression Profile