RNA id: TU762362


Basic Information

Item Value
RNA id TU762362
length 416
lncRNA type intronic
GC content 0.39
exon number 2
gene id G669270
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7303936 ~ 7304795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttattgtcacatacagcAGATAGGTTTCcaagtgttgttgtacagggtcagtcatagtagtgtgataggtgttgttttacagggtcagtcatagtagtgtgataggtgttgttttacagggtcagtcatagtagtgtgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttttacagggtcagtcatagtagtgtgataggtgttgttttacagggtcagtcatagtagtgtgataggtgttgttttacagggccagtcatagtagtatgataggtgttgttttacagggtcagtcatagtagtatgataggtgttgttttacagggtcagtcatagtagtgtgataggtgttgttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU762325 lncRNA downstream 40788 7262887 ~ 7263148 (-) True G669240
TU762309 lncRNA downstream 47740 7253783 ~ 7256196 (-) False G669230
TU762306 lncRNA upstream 20755 7325550 ~ 7334714 (-) False G669229
TU762307 lncRNA upstream 20755 7325550 ~ 7334714 (-) False G669229
TU762300 lncRNA upstream 21029 7325824 ~ 7334714 (-) False G669229
TU762301 lncRNA upstream 21029 7325824 ~ 7334714 (-) False G669229
TU762304 lncRNA upstream 21758 7326553 ~ 7334714 (-) True G669229
XM_036984640.1 mRNA downstream 16546 7256917 ~ 7287390 (-) True LOC110529175
XM_036984641.1 mRNA downstream 16550 7256917 ~ 7287386 (-) False LOC110529175
XM_036986820.1 mRNA downstream 69411 7000285 ~ 7234525 (-) True sipa1l1
XM_036984639.1 mRNA downstream 337685 6855891 ~ 6966251 (-) True LOC110529169
XM_036984633.1 mRNA downstream 502033 6786377 ~ 6801903 (-) False wdr21
XM_036984643.1 mRNA upstream 35904 7340699 ~ 7369515 (-) False LOC110529304
XM_036984646.1 mRNA upstream 35904 7340699 ~ 7369515 (-) False LOC110529304
XR_005052766.1 mRNA upstream 35904 7340699 ~ 7369515 (-) False LOC110529304
XM_036984644.1 mRNA upstream 35904 7340699 ~ 7369516 (-) False LOC110529304
XM_036984647.1 mRNA upstream 35904 7340699 ~ 7369516 (-) False LOC110529304
TU762099 other downstream 312324 6989850 ~ 6991612 (-) False G669087
TU762373 other upstream 12509 7317304 ~ 7320203 (-) True G669278
TU762305 other upstream 20755 7325550 ~ 7334714 (-) False G669229
TU762376 other upstream 96669 7401464 ~ 7414236 (-) True LOC110529302
TU762377 other upstream 111230 7416025 ~ 7418235 (-) True G669281
TU763125 other upstream 803076 8107871 ~ 8110958 (-) True G669918

Expression Profile