RNA id: TU762301



Basic Information


Item Value
RNA id TU762301
length 1080
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G669229
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7325550 ~ 7334714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACATTTATTTGGGTTAATTCACCTTGGTCAGACGACCACAACAGTCACAGTACATATTACATTTCTGTATAAAGTAAATAACTCACAACCATCCAAGATTCCAACAATTTATACTCAGGCCTTTATTTGGACAGCCCTaattttctcctcttctcccaatCCCGTGTTTGTCAGTTGGGGACCAGCAATCAACCCGTTTTGCTGGATGGATACTTGTAGTCCACTTCTCAGCAAGCACACCGCTCCACATATACAGTCCCTTCACAACGTTCACAGCCCTTttaacttttccacattttgtgttacagacAGAATTTAATATGAATTACATTTTAGATTTTTGTTATTGATAACCATAATGTCAAAAGTGGTCATTTTGTTTGCAGaacatgttgtttttttaaaatgcTGAAACTATTCCCCCCCTTTTGTTATGACTAatttaagttcaggagtaaaagtgttaaacaagtcacatggactcactgtgttcaataatagtggttaacatgattatTGAATGCCTACCCCCACACATACAGGTAAGGCCCCTCAATCGAGTAGTGAATtgcaagcacagattcaaccacaacgaccagggaggtttttccaatgccttccaaagaagggcacctattggtagatgggtaaaaaataaaaaaaagctaaATATCCCTTGGAGCATGGCAAAGTTATTTATTACACTTTGTatggtatatcaatacacccagtcactacaaatatacaggcgtccttcctaactcagttgccggaaaggaaggaaactgctctgggatttcaccatgaggccaacggtgaggatggctcaacattgtacttactccacaatactaacctaattgaaaagaaggaagcctccatatatcctgttgcaacaaggtactaaagtaatactgcaaaaaaatgtggctaaTAAATTTAatgttttgtcctgaatacaaagcgttatgtttggggcaaaatcCAATAttttcaagaatactagtggctgcatcatgttatgggtatgcttgtcattgttaaggactggggagtttttcaggataaaaaaaaataac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU762362 lncRNA downstream 21029 7303936 ~ 7304795 (-) False G669270
TU762360 lncRNA downstream 21029 7304287 ~ 7304795 (-) True G669270
TU762325 lncRNA downstream 62676 7262887 ~ 7263148 (-) True G669240
TU762314 lncRNA downstream 69628 7253783 ~ 7256196 (-) False G669230
TU762340 lncRNA upstream 12229 7346943 ~ 7350739 (-) True G669251
TU762381 lncRNA upstream 16973 7351687 ~ 7355081 (-) True G669285
TU762410 lncRNA upstream 52550 7387264 ~ 7388163 (-) True G669307
TU762414 lncRNA upstream 59511 7394225 ~ 7395040 (-) True G669311
TU762378 lncRNA upstream 66193 7400907 ~ 7423688 (-) False LOC110529302
XM_036984640.1 mRNA downstream 38434 7256917 ~ 7287390 (-) True LOC110529175
XM_036984641.1 mRNA downstream 38438 7256917 ~ 7287386 (-) False LOC110529175
XM_036986820.1 mRNA downstream 91299 7000285 ~ 7234525 (-) True sipa1l1
XM_036984639.1 mRNA downstream 359573 6855891 ~ 6966251 (-) True LOC110529169
XM_036984633.1 mRNA downstream 523921 6786377 ~ 6801903 (-) False wdr21
XM_036984643.1 mRNA upstream 5985 7340699 ~ 7369515 (-) False LOC110529304
XM_036984646.1 mRNA upstream 5985 7340699 ~ 7369515 (-) False LOC110529304
XR_005052766.1 mRNA upstream 5985 7340699 ~ 7369515 (-) False LOC110529304
XM_036984644.1 mRNA upstream 5985 7340699 ~ 7369516 (-) False LOC110529304
XM_036984647.1 mRNA upstream 5985 7340699 ~ 7369516 (-) False LOC110529304
TU762373 other downstream 5621 7317304 ~ 7320203 (-) True G669278
TU762102 other downstream 334212 6989850 ~ 6991612 (-) False G669087
TU762376 other upstream 66750 7401464 ~ 7414236 (-) True LOC110529302
TU762377 other upstream 81311 7416025 ~ 7418235 (-) True G669281
TU763125 other upstream 773157 8107871 ~ 8110958 (-) True G669918
TU763341 other upstream 1006276 8340990 ~ 8342120 (-) True G670097
TU763857 other upstream 1242337 8577051 ~ 8577780 (-) True G670549

Expression Profile