RNA id: TCONS_00035628


Basic Information

Item Value
RNA id TCONS_00035628
length 1253
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_018082
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25440514 ~ 25445246 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCAGAGGTCAAACATGGCGGCGTGCACAAGGAGGGCGAGAGAAATGATGGGCTTGTTACGATTTTTAAGAAATATACCTCAGACTGAGAGGTTTTTGTCGACATCGGTAATGAGACACGCGTCAGATGGACCTTCAAAATTCATCCCTCCGACCAAACCCGTTTTCACAGACAAATCACAAGAAGAGGCATCAGTCCGGCGgGTTTTAAGTCCAGAGTTCATCCCTCCTCGCCAGCGCACTGACCAAATCAAGTTTTATATAGAACGGAAAGATATGATACAGAGGAGGAAAGTTTTGCAGATTCCAGAGTTTTACGTTGGCAGCATTTTAGCAGTGACCATGACAGATCCTTACGCGAGCGGGAACCTGAATCGCTTTGTTGGAATCTGCACTCAGCGCTCTGGAAAAGGATTGGGTGCTACTTTTATACTTAGGAATGTCATCGATGGGcaagGAGTAGAGATATGCTATGAGCTGTACAGTCCACGTATGCGTAAGATTGAAGTGTTAAAGCTGGAGAAGAGACTGGATGACAATCTCATGTACTTGAGGGACGCTCTGCCTGAATACAGCACTTTTGACTTTGACATGCAACCTGTCCATTATGAGCTCACGAAAGACATCCCAGTCAATCCGttaaaagtaaaaatgaagcCAAAGCCGTGGTCTAAACGTTGGGAGCGCCCCAAGTTTGACATTAAGGGTATCCGCTTTGACCTGTATTTGACTCCAGAGCAGatggagcatgcgcagaagtggGGAGAACCATGGAGAGAGTATGATATGCTAAAGGAGTATGACACATCCAGTCTAGAGAAGAAGATCCTTGAGGAGGTGGATGAAAATCTCAGAAAGTAGACTGTACATGGAGACTATCTCTGTGAATGAACATGAGGCTCAGGTGACCCCTTTTAAGATGCTGAACAGATCTGAAACATGCTCGTCTAGGTTTGTAGAGATACATGGAGATATTTGACTTTGGGGGAAATCATTTTGGAGATTTTCATGTGTGTCTAAATTACGTTTTTTCACCGGCTCCGCTGCTGATGCTGAGCTACAAATGGccctttaattaaaataatagcaaTCATTCTAtgctaatgtttattttagtgtcaTTAGTGTCATCACACAAATTTCTCTGTGGTTTTACTTTCTTGCTTGACCAAAAGGGGGCAGCAGAGAACAGCAATACATGTAAATTAATAtctgaataaatgataaataaaatctaaaccgTTAATCCTGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040801-55 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL19 (mitochondrial ribosomal protein L19).

Ensembl:

ensembl_id ENSDART00000018049

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036840 lncRNA downstream 28333 25401086 ~ 25412181 (-) True XLOC_018081
TCONS_00036839 lncRNA downstream 129060 25307795 ~ 25311454 (-) True XLOC_018080
TCONS_00036476 lncRNA downstream 708205 24729131 ~ 24732309 (-) True XLOC_018078
TCONS_00036838 lncRNA downstream 985585 24448007 ~ 24454929 (-) False XLOC_018077
TCONS_00035638 lncRNA upstream 103179 25548425 ~ 25551676 (-) False XLOC_018087
TCONS_00035640 lncRNA upstream 154859 25600105 ~ 25605285 (-) True XLOC_018088
TCONS_00036841 lncRNA upstream 220803 25666049 ~ 25669922 (-) False XLOC_018091
TCONS_00035653 lncRNA upstream 265545 25710791 ~ 25712415 (-) True XLOC_018092
TCONS_00036842 lncRNA upstream 617299 26062545 ~ 26070949 (-) True XLOC_018101
TCONS_00035623 mRNA downstream 4125 25359064 ~ 25436389 (-) False XLOC_018081
TCONS_00035625 mRNA downstream 28333 25359108 ~ 25412181 (-) False XLOC_018081
TCONS_00035624 mRNA downstream 70747 25359067 ~ 25369767 (-) False XLOC_018081
TCONS_00035621 mRNA downstream 477422 24817118 ~ 24963092 (-) False XLOC_018079
TCONS_00035622 mRNA downstream 477476 24817836 ~ 24963038 (-) True XLOC_018079
TCONS_00035629 mRNA upstream 27810 25473056 ~ 25481306 (-) False XLOC_018083
TCONS_00035630 mRNA upstream 27810 25473056 ~ 25486384 (-) True XLOC_018083
TCONS_00035631 mRNA upstream 70013 25515259 ~ 25522911 (-) False XLOC_018084
TCONS_00035632 mRNA upstream 70014 25515260 ~ 25518488 (-) True XLOC_018084
TCONS_00035633 mRNA upstream 80556 25525802 ~ 25533739 (-) True XLOC_018085
TCONS_00035626 other downstream 70634 25368510 ~ 25369880 (-) False XLOC_018081
TCONS_00035616 other downstream 1268374 24152799 ~ 24172140 (-) False XLOC_018073
TCONS_00035611 other downstream 1317757 24083139 ~ 24122757 (-) True XLOC_018072
TCONS_00035595 other downstream 2014860 23423846 ~ 23425654 (-) True XLOC_018063
TCONS_00035593 other downstream 2191875 23245639 ~ 23248639 (-) True XLOC_018062
TCONS_00035635 other upstream 92334 25537580 ~ 25538417 (-) False XLOC_018086
TCONS_00035636 other upstream 93109 25538355 ~ 25540754 (-) True XLOC_018086
TCONS_00035639 other upstream 104179 25549425 ~ 25550816 (-) True XLOC_018087
TCONS_00035648 other upstream 197434 25642680 ~ 25644837 (-) True XLOC_018090
TCONS_00035651 other upstream 220803 25666049 ~ 25709349 (-) False XLOC_018091

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_04527628_04530638.mRNA True 1088 mRNA 0.44 5 CI01000325 4527251 ~ 4530638 (-)