RNA id: TU806001


Basic Information

Item Value
RNA id TU806001
length 513
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G708758
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 41850901 ~ 41867282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcgtaggctatgtgttacagcactacttttggtgttttttcaggaattgctcttgagaaaatgtcatgtaattgtcccctccaaagttgataacagattttagcccctgctagggcagatggcacacagacagcagaactggggacagatatgcagggacagactggcagagacagggagtctcaggtaagtttgttgcaccccatatacagtcagtgtacagtaccattgccacctactctccagtatgtatgcaggtatatgtactacaaccagcaataccaagaaaggctggttgtaaaagcacatatacctgcatacatactggactgataaggaacactgcttttaactattattagtagtagtattataatgatttgaacaagttgggacaacctttcagttcactactgtacctatcaattaaccagtagtagtgattatggttcctcaatatacatttaacatattacagcgtaggctatgtgttacagcactacttttggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805984 lncRNA downstream 87478 41756991 ~ 41763423 (-) True G708745
TU805975 lncRNA downstream 88363 41754445 ~ 41762538 (-) True G708738
TU805945 lncRNA downstream 125048 41725469 ~ 41725853 (-) True LOC118965611
TU805947 lncRNA downstream 128334 41705704 ~ 41722567 (-) True G708729
TU805930 lncRNA downstream 168903 41678186 ~ 41681998 (-) True G708716
TU806005 lncRNA upstream 3152 41870434 ~ 41884426 (-) True G708761
TU806008 lncRNA upstream 16069 41883351 ~ 41924199 (-) False G708762
TU806010 lncRNA upstream 44303 41911585 ~ 41929952 (-) True G708764
TU806006 lncRNA upstream 55633 41922915 ~ 41931521 (-) True G708762
TU806017 lncRNA upstream 65257 41932539 ~ 41942456 (-) True G708769
XR_005053021.1 mRNA downstream 121914 41725521 ~ 41728987 (-) False LOC118965611
XM_036985475.1 mRNA downstream 881423 40958142 ~ 40969478 (-) True LOC110529916
XM_021612576.2 mRNA downstream 881427 40958142 ~ 40969474 (-) False LOC110529916
XR_005052877.1 mRNA downstream 1050864 40779851 ~ 40800037 (-) False LOC118965517
XM_036985477.1 mRNA upstream 473400 42340682 ~ 42420086 (-) False klhl18
XM_036985478.1 mRNA upstream 473400 42340682 ~ 42420087 (-) False klhl18
XM_036985479.1 mRNA upstream 473400 42340682 ~ 42420087 (-) True klhl18
XM_021612584.2 mRNA upstream 564509 42431791 ~ 42525669 (-) False puf60a
XM_021612585.2 mRNA upstream 564509 42431791 ~ 42526527 (-) False puf60a
TU804129 other downstream 1891288 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 2624588 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 3537098 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 3812555 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 4358744 37489227 ~ 37492157 (-) True LOC110530908
TU806574 other upstream 852489 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 1303478 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 2671511 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 3590495 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 4443848 46311130 ~ 46325681 (-) True crfb16

Expression Profile