RNA id: XM_036988215.1


Basic Information

Item Value
RNA id XM_036988215.1
length 4032
RNA type mRNA
GC content 0.49
exon number 5
gene id klhdc8b
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48831069 ~ 48935332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTAGGGAAGCTCCTCCAGGACCTTTTCTGCCACAACACAACTCCCCGCTTCTCCTCCAATCACCCCTGGACTACACCTACCACTGAGGAAGAGCTTCAGGAGACTACCGGGAGAGTCAGATTCCTGCCCCTGGAATACCAACAAGTGTGCATCCTTTTACACTTTTCATCCTTAATTTCAAATCCACCTACTCTGAttacgaggggggggggggaagcgtTTGCTAGCATCTCTGGCCTCTTGGAATCGATCCTGTGGGAACTGTTCTAGTTTTGAGCCTGCATTCCTTCAGCTGACTCGGCCCATCTGGTGTGTTTCTACTGAACACTTTCAGGAACTAACACAAATCTAGTACTCTGCTGCAGGGATACATTGGTACATTGTAACCTAACAACAAGCCCTATCAgaagaggtaaagaggagaggcCCATCTTGGAGtgtgcccactgggcacagatgtcaattcaatgtcttttccacgttggttcaacctAATTTCATTGGAATGACGTGGAAGCAACAttaattcaaccagtgtgtgcccagtgggtggtgtGTTAGAGCTAGTGGAAGATACACCTGTGGACTTATAAGAGGCTCTGCAGAAGAAGACCTGATCCTTCCTGAACTGTAAAAACACAGGGTCTCTCTGAAGAGATATCTGTCCATCTTTTCTCTCTGGGTGGAGAAACCCCTTCCTGCACTCAGCCAGCGTCAGACCTCCGGGCCTCTAACGATTGCTCTACATCTCCCcatatctgtctatctgtctgttttctctctatctttctttttCACCTGTCTACTTCACTTTGccctctctcaatttctctcctcctccccattcaTTCTCTTTTTCTCCTTTTCCACAACACCCATTTCTGTCACatgctctctctgttcttctaATTAACGATGCTTGTGTACCAATTAGACATTCAGTCGGTGCGACCCGAACCCTGAGAGCCCCAGTGAAAGCAGGGACCTTTGGTGTACTGCTGGTGTGTGGATCGTGCTGTCCTAgacctccacccccccaccccccagtacCCCCTGTCATTGGCCTTGGCTGTAAATGTCACGGCGCCGGCTGCCCACGGCTGAATCGTCCACAGGGTCACAGGGCTGGCTCTTTTATTTTCCACAGGCCAGGAATCTCTGTGAGAGCCTCACTGTGTCTCAGGGGAACAGAAGTTACTCCTCAGCCCCAGTTGGGCCCTGACAGCTGCCTTCTGGAATTGAGTGTTTTGGTCTAATTAGAAACTTTCTGTCTGACCTCAAGAGCTTATTCCTATTATACTTGGAGGCAGTTTTCATTTGAAGCCTTTGTTCGGTTTTGGTTTTTACCCTCTTCACCAGATTCAAATAACTGCTGAAGCCCAGGATAATTGCCTTTGGCTGAGAATGTGAATGCAGGTTCCTTCCAAGTCATTGCAGTGGATTATCATGAATTATCATTACCGTGAAGGTCACACCCTGTAGGTTTTTCTCCTTCGTTGTTTGATCCAGCTCCATCTTCCACTTGACGCTAACACTTCACAGGGATTGTGCATAAAGCCGGGCACACCTTCTGCGTGTGTTCGCTATAGGAAGCCTTCAAAAAACCTTGTTTTAGTGTATTCCTCTCTAGAGAGCAGCGCACAGCTGCACAACAATCAACTGTGGTGATTTTTTTGCCAAAATAAAGGCCCTTGAATGGAGTAAAATGAGAAAAAAGGGCAGATGGCAACCCTGCTTTAAAACATCAACAAATTCATTAATACAACATTGGGTGGTAGAGGCATTTGGCAAAGTGCTGAAgtagcctctctctttctctgtcacgtTCCCTCTCTCACTTGAGACAGGGGATCAGGTAGCAGAGCAGAAAGACCGGAGGTTGATCCGCAGTGCCCTTGCTTCTCtgtttgttgtgtttttgtttgtccccCCACCCGTCCGTGGATGTAATGACCCATCACCTTCGTCAGCCTCAGGAGAGATGCCTATACTCGAGATGGCAGTGAGCCTAGTCAAGTCCCTGTACTGGGAAGTGTTCCCCCCCATGTCCACGTGCAGGGTCTACTGCACCCCTGTGTTCCATGACGGCCTGCTCTATGTGCTCGGGGGCTGCAGTGAGACAGGCCTGCCACTAGACACTGCCGAGGTGCTGGACATAGAGAGCCAGACATGGACCCAGTTACCTCCACTCCCTACAGCCCGTGCGGGGGCATCAGCGGTGGCCCTGGGGGGTCAGGTGATGGTAATGGGGGGCATGGATGGCCAGCAGAGCCCCCTGTCCTCCGTGGAGGTCTACAACCCTGACGAGGGCAAGTGGGAGAGGAAGGCCAGCCTAGGACAACCCTCCATGGGCATCACCTCATTAGAGAAAGatgGGAAGGTATATGCGCTAGGAGGGATGGCAGCTGACACGACGCCCCAGGCTCTGGTGAGGGTTTATGAGCCGGAGAAGGACCAATGGCAGCCCCTGACCTCTATGCCCACGCCCCGCTATGGAGCCGCCTCCTTCCTGAGAGGCAACAAGATCTACGTGCTGGGTGGGCGTCAGGGCAAGCTTCCTGTCACAGCCTTCGAGGCCTTTGACCTGGAAATGAAGAGCTGGACGCATTACCCCTGCATCCCCAGCCGCCGGGCCTTCGCCTGCAGTGCTGCTACCGAGCGGGGCTTCTTCAGCCTGGGAGGGCTCCAGCAGCCTGGCCCCCACAACTTCTACTCCAGACCACACTTCGTCAGCACAGTGGAGGAGTATGACCCAGAACAGGGTATCTGGATGAAACCAACCCGAACCTCCAGGATGAGGGTTAAGAGAGCAGACTTTGTGGCCGGATGTCTCGGTGGAAGGGTCATCGTTGCTGGTGGACTAGgtaaCCAGCCTTCGCCCCTGTCGTCGGTTGAGAGCTACAATCCTGTGAAGCGGAGTTGGGAGTACGCTGCCCCCATGCCCAGTCCCCGCTGCTCCTGTTCACCCCTGCAGACCCCCAACATGCTGTTTCTCATCGGGGGCGTGGCCCAGGGACCCAGCAACGCCGTGGAGGCTCTTTGTCTCAGAGAGACTGTgtgacacacacacggacagacgAAAGACTTAATGCAAGCAAATTCAATGTGTGCAGGTGATGGACACTCATACAGACTTTGTTTTTGCCTTTGAACCTTGCAGTTGGTGGGCAAGATCAAGTACAGTGACCCTGACACCTGTTTCTTTCAATGgagaaacaaatacatttctacATCTTAGAGACATAAGAAGAGTCAAATAAATAAGCAAAAAACAACACCACAGAcgcatagacacactacacaaaAGACGCCTTTGAACAGTACAGCATTTTTCTGGAAAAAAGCAGGGTACTTTTCTGGAAACTAAAGGAACTACGGGCCATATCTGTTTCACTACAACAGTCAGGCTGCATTGGCTTGTTAAAACACTTTTCTATCACCTTTAAAAAAGCAGAGAGTTTAGGATATAACATTGAGGTATTTGTCTGTTTTGGTACCTTCACAGCCAGGTGTGTGTGAATATAGCACAGCTATACACATGATGTTCAAATCCCACACCATGAATACCACCTCTAGAATGGCCAGGCCAATCCCTGCACTGTAGCATCCAGAGACAAGAGTGCTTTGGCACTAAGCAACATTTCCCTTTTTAAGAGAAAAATATACGTATATATTTTACCTCAAGAGCTTTGCAATGAACGACATATGAACTGAAGGCAGGACAAAGTGCATGCTCAGAAAGTGTGTTTATTTCAGATAATCCTTAGGTGGCGTCTTAAAAAGAGAGCAATGGAAAGAGAGAAATTGGGAAGTGTGTTTTTAAATAGAAAATCGTAAATGGAAACTTCACCGCTAGACAATATTTGGAGTTTTTCCAGTTCCCTGCATAATTATGAGTGATGAGcggtgtttcagacataattatgagtgatgagaggtgtttcagacataattatgagtgatgagaggtgtttcagacattatgagtgatgagaggtgtttcagacataattatgagtgatgagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU924875 lncRNA upstream 34294 48796303 ~ 48796775 (+) True G812966
TU924860 lncRNA upstream 88731 48741802 ~ 48742338 (+) True G812951
TU924612 lncRNA upstream 211011 48619769 ~ 48620058 (+) True LOC118966185
TU924551 lncRNA upstream 289371 48540338 ~ 48541698 (+) True G812684
TU924553 lncRNA upstream 292192 48538027 ~ 48538877 (+) False G812684
TU924877 lncRNA downstream 3827 48939159 ~ 48939587 (+) True G812968
TU924878 lncRNA downstream 6867 48942199 ~ 48943429 (+) True G812969
TU924993 lncRNA downstream 26855 48962187 ~ 49006710 (+) False G813074
TU924998 lncRNA downstream 32432 48967764 ~ 48975385 (+) True G813076
TU925022 lncRNA downstream 76002 49011334 ~ 49011612 (+) True G813099
XM_021616021.2 mRNA upstream 41324 48782956 ~ 48789745 (+) True si:dkey-32e6.3
XM_021616011.2 mRNA upstream 48330 48747663 ~ 48782739 (+) False usp19
XM_021616024.2 mRNA downstream 53110 48988442 ~ 48994535 (+) True LOC110532277
XM_021616025.2 mRNA downstream 59303 48994635 ~ 48998285 (+) True LOC110532278
XM_036988217.1 mRNA downstream 77831 49013163 ~ 49060073 (+) True LOC110532282
XM_036988220.1 mRNA downstream 128356 49063688 ~ 49081175 (+) False LOC110532283
XM_036988219.1 mRNA downstream 128628 49063960 ~ 49081175 (+) False LOC110532283
TU924562 other upstream 260476 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 848768 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2695337 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 4377992 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 4635028 44195715 ~ 44196041 (+) True G807677
TU924989 other downstream 24417 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 67987 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 179805 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 1860882 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1860988 50796320 ~ 50800381 (+) True G815428

Expression Profile