RNA id: XM_021616025.2


Basic Information

Item Value
RNA id XM_021616025.2
length 2299
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110532278
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48994635 ~ 48998285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTCCTCTCACTACGTGATTCTGAAACCCCACTCAATGAGGAAGAACAACCCTTATTGGAAAATACAGACAGGGAGGAAAGAGGCATAGTAAACAAGGCAGATAACTGAAAAAAACCCATCAAATAATATAGCCAACACGTGCGCGCAAAACAGATTATTTAGCGAGTATTCATTATAGGCACGCTATTCGTTCTGTATGTAACGTTACTGTGTTGCCACTGCACGCTAGATAGCGCTAGCTAGGGAACTTGTAActcacgttagctagctggctagcaagcTCCCTTTCCCAGTAGTAGCAGTGCCATCACAACGCTCCCAGAATGATCGCTTTGATCAACAAGCTCCTTGACTGGTTTAAAGCACTATTTTGGAAGGAGGAGATGGAGTTGACTTTGGTGGGGCTACAGTATTCGGGAAAGACAACCTTCGTGAACGTGATTGCGTCAGGCCAGTTCAGTGAAGACATGATTCCCACAGTGGGCTTCAACATGAGGAAAATCACCAAGGGAAACGTCACCATTAAGCTGTGGGATATCGGTGGTCAGCCTCGATTCAGGAGTATGTGGGAGCGATACTGTCGAGGAGTCAGTGCCATCGTGTACATGGTTGATGCAGCTGACCCAGAGAAAATCGAGGCCTCTAAGAATGAACTACACAACTTGTTGGACAAGCCCCAGCTCCAGGGTATTCCTGTCCTTGTCTTGGGGAACAAGAGAGATCTTCCTGGGTCGCTTGATGAGAAAGAGCTGATTGAGAGGATGAACCTCTCAGCCATCCAGGACAGAGAAATATGCTGTTACTCTATCTCTTGCAAGGAAAAGGACAACATTGATATAACACTACAGTGGCTGATCCAGCACTCCAGAACCAAGCGGAGCACTTCATGAGAACCTCATCTCACGGTCACAGCCCTGAGACCGCCCCACAGACCTGCACAGGTCCCTTACaccctgtcctctatcctcccaaGCTTGTCCATTCTCCCCCTATTTTCTTTGGATGGCCCTCTCTTGCCAAGACTCCTTGCCTGATTCCACTCTCCTGAAGAGAGCCTGGAAACGTTTTACTTGCACTGTTCATTTTCTTTTttgtaatataataattattgtaGTGACATATGACCTCTGATGGATAAAGTGGTACTTAGCTGCCctgaaaaatgaaaaaaatgataaTTGTGTTCATATTTCATACTTCATCATCTCTGTTGATGTTGAGGTTCATATTCAACTGATCCGGAGACAGGGCGGAGTACTGTACGTAACCTCTGATCCCAATAGGTAGAAAAGACTATGGACTCTGAACCCTGCATCAATTAACAGCCCCAAGTCAAGTTTAGAATGCTGATATCAAATCTCAAACAATATAAGACTCAGGCCATAGTCTTATCACTTCCCAATGTCGGTGCTCAACTGaaatggtactgtacatgtatgtacCTTTTTTGAAGGGGGAGCATTGCGCCATTTGATTTAAATACTTGGAGTGTGTACAAGTATCTCCGCCTCTCATTTTTTAAAGGCTAATGGTAGGTGTTGTTAAAGAGTACCCTTGACGTAATCTCTATTGtcaatatatatctatatatacatttGCCTGATATGTCGTCATCTCTGTCTGTCGCCCTGACACCCTTCTGTTACTTTAGAAACAGCAGACAGGGTTTCTTTAAACTAAGCAACCTGGCCTTTTTAAATGTTCATAGGCCATGTCTATGGTCAAGCATTATCTGCAACACATGGTTtataaacaaaatatatatttatcgaTTTTTGCATATTCTTTCCCCTTTCTTACCATTAATTTATGTAATAGCTCATTTCCAACCAGTAATGTACAGATACTACTTGGCCAGTTTTTGTCTCATCACGAGTCATGAATAACCCCATTATAAAATGTAAAATCTGTTATTCAGTGACTGTTGATAAAGAAGTCCTCTCGATACATTGTGATTGTACAGGTGCCAGCCATATGAACTAACGGTGAAGGCTTCTATCTAATTTTGTATAAACTAAACTTACATGTCTATGAATTATTCTGCTTCCTACATTGCCAAAATTACCTAAGTCATTTTTGATTATTGACAACCCGCAGCAAAATATCTTTACTTACTTATTTGTTTGCATGCTTGGGCATAAGTATTTGTGGGACCTTTGAGAATGAACTAAAAATTGTTATTTTTTATGGCAAATAATAGTAAATACTGTATCTGGTTTAACCTGTTTGTACATTGTTTCAATTAAATTGATGATTGTGTATAATACTAACTAAAAACAATGGTGAAAACAACTTCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU924998 lncRNA upstream 19250 48967764 ~ 48975385 (+) True G813076
TU924878 lncRNA upstream 51206 48942199 ~ 48943429 (+) True G812969
TU924877 lncRNA upstream 55048 48939159 ~ 48939587 (+) True G812968
TU924976 lncRNA upstream 64208 48930216 ~ 48930427 (+) True G813060
TU924968 lncRNA upstream 79027 48915276 ~ 48915608 (+) True G813052
TU925022 lncRNA downstream 13049 49011334 ~ 49011612 (+) True G813099
TU925023 lncRNA downstream 13361 49011646 ~ 49011948 (+) True G813100
TU925049 lncRNA downstream 84039 49082324 ~ 49082584 (+) True G813125
TU925056 lncRNA downstream 86632 49084917 ~ 49085116 (+) True G813128
TU925063 lncRNA downstream 105298 49103583 ~ 49103820 (+) True G813135
XM_021616024.2 mRNA upstream 100 48988442 ~ 48994535 (+) True LOC110532277
XM_036988215.1 mRNA upstream 59303 48831069 ~ 48935332 (+) False klhdc8b
XR_005053268.1 mRNA upstream 60879 48909280 ~ 48933756 (+) True klhdc8b
XM_021616021.2 mRNA upstream 204890 48782956 ~ 48789745 (+) True si:dkey-32e6.3
XM_021616016.2 mRNA upstream 211896 48747665 ~ 48782739 (+) False usp19
XM_036988217.1 mRNA downstream 14878 49013163 ~ 49060073 (+) True LOC110532282
XM_036988220.1 mRNA downstream 65403 49063688 ~ 49081175 (+) False LOC110532283
XM_036988219.1 mRNA downstream 65675 49063960 ~ 49081175 (+) False LOC110532283
XM_036988218.1 mRNA downstream 65676 49063961 ~ 49081175 (+) False LOC110532283
XM_036988222.1 mRNA downstream 65760 49064045 ~ 49081175 (+) False LOC110532283
TU924989 other upstream 34644 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 424042 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1012334 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2858903 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 4541558 44442662 ~ 44453077 (+) True G807841
TU924996 other downstream 5034 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 116852 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 1797929 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1798035 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 2080162 51078447 ~ 51078942 (+) True G815610

Expression Profile