RNA id: XM_036988220.1


Basic Information

Item Value
RNA id XM_036988220.1
length 1866
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110532283
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49063688 ~ 49081175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCATGATTAAACATATTTGAAAAGTGGTCATGACTGATTCAGACCTGTGTagacctctcacctctctgttGCCCCTGAgagacctttaaaaaaaatacaatttactcCTACAAGTAGATTCCAGCTTTATGCAAACAAAAAGAGCAAGCAGCTCAGTCATGAGttgccccactcctctcctcctcctcattggTATTTATGGACCATGTTCAGGCTTCAAGATATGTGCCTTCAACATCCAGAACTTCGATGCCATCAAATCAGCCAACTACAGAGTGATGCACACTCTGACCAAGGTTGTGTCTCGCTGTGACATCTGTCTCCTTCAGGAGGTAAAAGACCTACAGGGCAAAGCCACCAAAGCTCTGTTGGGGAGACTCAACAGATACAGTACTAGATATGATGACCAATATCACTATAAGTATGTTGCCAGTGGAGGTCTGGGGCGGACACCTGAAGACCAGGAGCAATATGTCTATCTGTACCGGAATGAGACTGTGGAGTTGACAGATAGGTACCAGTACGCTGACAAAAAGGAAGGGGGTGTGGATGCTTTCTCCAGAGACCCCTTTGTTGTTAGATTCCAAGCCAAGGAAACAGTGATAGGCGACTTTGCTCTGATCCCACTGCACACTACGGCCTCTGACGCAATCAAGGAGATTGACAAGCTTTATGATGTCTTTGAGGAAATAAAAAGGAAGTGGAATACTGAGAAAGTGATGTTCCTTGGAGCCTTCAATGCTGGTTGTGGGCACatgacaaggcaggacaaggcaaacATCAGACTGTTCTCAAACCCTGGATTCTTCTGGTTGATCGGGGACAAGGTGGACACCACTGTTGGAGACCTCACCAGCTGTGCCTATGACAGGATTGTGGTACACGGACAGCCCTTCTTAAAGGCCATCAAACCTTATTCAGCTCGGGTCTTCAACATCGCCAAGGAGTATAAACTCTCAAAGGAAATGGTTCTGGAAGTGAGTGACCACTTCCCTGTGGAAGTGGAGCTGAAGACTAAATCGTCGGGGCAGCTTCAAGCTCAGATTCAGCCTCTCCTCCTAATCGCAGTCTCTGTCATAACCTACGTCCTGCACATCTTACCTTCAACCAGTGTGCTGTGAGGAGGACTGAGGGCCTTCTCTGAAGTATGAACCATAGCAATATAATTAATTCTATGGTATTTACATCTAGAACTTCCACGAGCAGCTCGTCCTCTCATGCAGGGGTTCACAAACCTCTCTTCGGGGACACCTAGACGCTTAAGaattttgttgtagccctgaactagcTAATCTGATTAATCGAATCAAggtcttgatgattagttgacaagtttaatcaggtgtgctagctctggaatagaTCTAATATAGGGAACTGCTGGGGGTCCCCGAGAAGAGGTTTGAAAACCACTGCTCTAATGCACAGTGATGATTACATCTTTGGCTGGTCCCCTTGAGATTGCATGAAGATTTAAGACATTAAGAGGCAGCAACATTATCACTACATGAGTTAGTTGATGGCAAAATGTCCCTAATCTCCTTTTTCCCAACATATCTATGAATTTGCACTGGTGATAGGTTACTGATCCCCATTTGCGCTGACATCCTGTTTCAGGTATTTGACTCACATCTTGAATGGAAGGCTACAGCTTCCTGAAGCCCCCACTTCTGTCAATAATCTTTTAATAACAGAGAAATAAATATTATACTTTGTAAATGCATAGTTGTAAATATTTCAAGTTACATTTTATAGGTTAAGACATTCTATAATAATGTGGTTTCAACATTGTCACTAAATGTGTTTAAAATGTTCCATgcctgtactgtacatattatttGAATAAAACATGTATTGAAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925023 lncRNA upstream 51740 49011646 ~ 49011948 (+) True G813100
TU925022 lncRNA upstream 52076 49011334 ~ 49011612 (+) True G813099
TU924993 lncRNA upstream 56978 48962187 ~ 49006710 (+) False G813074
TU924998 lncRNA upstream 88303 48967764 ~ 48975385 (+) True G813076
TU924878 lncRNA upstream 120259 48942199 ~ 48943429 (+) True G812969
TU925049 lncRNA downstream 1149 49082324 ~ 49082584 (+) True G813125
TU925056 lncRNA downstream 3742 49084917 ~ 49085116 (+) True G813128
TU925063 lncRNA downstream 22408 49103583 ~ 49103820 (+) True G813135
TU925065 lncRNA downstream 24803 49105978 ~ 49106213 (+) True G813137
TU925068 lncRNA downstream 34508 49115683 ~ 49116087 (+) True G813140
XM_036988217.1 mRNA upstream 3615 49013163 ~ 49060073 (+) True LOC110532282
XM_021616025.2 mRNA upstream 65403 48994635 ~ 48998285 (+) True LOC110532278
XM_021616024.2 mRNA upstream 69153 48988442 ~ 48994535 (+) True LOC110532277
XM_036988215.1 mRNA upstream 128356 48831069 ~ 48935332 (+) False klhdc8b
XR_005053268.1 mRNA upstream 129932 48909280 ~ 48933756 (+) True klhdc8b
XM_021616031.2 mRNA downstream 4649 49085824 ~ 49097702 (+) False LOC110532284
XM_021616032.2 mRNA downstream 4662 49085837 ~ 49097702 (+) False LOC110532284
XM_021616034.2 mRNA downstream 4690 49085865 ~ 49097702 (+) False LOC110532284
XM_021616033.2 mRNA downstream 5083 49086258 ~ 49097702 (+) False LOC110532284
XM_036988224.1 mRNA downstream 6086 49087261 ~ 49097702 (+) True LOC110532284
TU924996 other upstream 56978 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 103697 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 493095 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1081387 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2927956 46134731 ~ 46135732 (+) True G809685
TU925067 other downstream 33962 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 1715039 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1715145 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1997272 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 2264197 51345372 ~ 51346494 (+) True G815767

Expression Profile