RNA id: XM_036988217.1


Basic Information

Item Value
RNA id XM_036988217.1
length 9141
RNA type mRNA
GC content 0.51
exon number 58
gene id LOC110532282
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49013163 ~ 49060073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAATCTACATTGTTAGAACAGGCTACTGCTGCTCACTAGAGGATTTATCATCATCACACACTTCCTGGTTTTAAAGCTTTCTGTCTTCAGGTGCAGTGACAACATGAGGACTTCGCTGACACATTTGGACTTTCTCTGCTTTCATTTATATTGGGCTATCATTGCTCTTTTTCGGGTTTAAACTTTATTTCATAGAACATAGAAAACTATTATTTGAATGAACTACATTGTCCTCCTCGATGCAGTACAACAAAGTCTAAAGTCGTTCGAATGTGGGTTCTTAGCCCTCGGGGGGAAGAGCGACATTAGATAACGCGTAGCACTCCAAGAAGTTGTTGCAGTCAAGTAGAGAAGACAGAAGGGGACAAAGTTTGTATTTCAGTTGATCATTTTCAAGAAGAAAGACACCGAAGATGTCGGATTCAATGTCCAGCTTTTTGCACATTGGGGACATCGTTTCCCTTTACGCAGAGGGCTCTGTCAATGGTTTTATAAGTACACTTGGGTTGGTGGATGACCGATGTGTGGTAGAGCCAGCTGCAGGGGACCTGGACTATCCTCCCAAGAAGTTCAGAGACTGCCTCTTCAAAGTGTGCCCCATGAACCGTTACTCTGCACAGAAACAGTTCTGGAAAGCCAAGCAGGCCAAGCACGAGAAGGACAAGATCGCTGATGTTGTGCTACTTCAGAAACTACAGCATGCCTCTAACCTGGAGCAGAAACAGAATGAGACCGAAAACAAGAAAGTCCACGGAGATGTAGTAAAATATGGCACTGTCATTCAGCTGCTGCATATGAAGAGTAATAAATACCTGACTGTGAATAAGCGTCTGCCTGCCCTGCTGGAGAAAAACGCCATGCGGGTCACCCTGGACGGGACGGGGAATGAGGGCTCCTGGATGTTCATCCAACCCTTCTGGAAGCTAAGGGCCAACGGAGACAATGTAGTGGTAGGAGATAAGGTGATCCTGAACCCAGTGAATGCAGGCCAGCCCCTACATGCCAGTAACTATGAGCTCTCTGACCACGCTGGATGCAAAGAGGTTAACTCTGTGAACTGCAATACTAGCTGGAAAATCAACCTGTTCATGATGTTCAGTGACCACAAGGATGAAGTCTTGAAAGGAGGGGATGTGGTGCGGTTGTTCCATGCGGAGCAGGAGAAGTTCCTGACCTGTGACGAGTACAAGGTCAAGCTGCATGTGTTCCTCCGTACCACCCTGCGCCAGTCTGCTACCTCTGCCACCAGCTCCAATGCCCTGTGGGAAGTGGAGGTGGTGCACCATGACCCATGTCGAGGAGGGGCCGGACACTGGAACAGTCTGTACCGCTTTAAACACCTTGCCACAGGGAACTATCTTGCAGCTGAGGAAAATCCGGGTTATAAAGGTGACAGCGTTGAAATCCAGCCTTCGGCGAGTGAAGATACGCTGGACAGTAGAGGAAAACTAAAGATGTTGGGTGAGAGGATAAAGTACAAGCTGGTGGCTGTGCCTCATGGGAATGACATTGCTTCCTTGTTTGAGCTAGACCCCACCACTCTGCAGAAAACAGACTCCTTTGTGCCAAGGAATTCATATGTGCGTCTCAGACACCTATGCACCAACACATGGATCCAGAGTACCAACGTGCCCATAGATATCGATGAGGAGAGACCCATCCGGCTCATGCTGGGCACCTGCCCTACCAAGGAGGATAAGGAGGCATTTGCCATAGTGTCAGTGCCAGTGATGGAGATCCGGGATCTGGACTTTGCCAATGATGCCAGTTTCATGTTGAGCACCATAGTGGACAGGTTCAATGAGGGCTTTATCAGTCCCAATGACAGAAGATTTGCCATTAAGCTGTTGGAGGATCTGGTGTTCTTTGTGGTGGACACGCCCAACAGCGGCCAGGTCGTCCTGGATGTGGCGATGACCAAGGCCAACCGCGAGAGACAGAAACTCATGAGGGAACAAAACATCCTCAAACAGATCTTTGGGATCTTGAAGGCCCCTTTCAAAGATAAGGGGACAGAGGGCCCGTTGCTGCGATTGGAGGAGCTGTCAGACCAGAAGAATTCCCCCTACCAGTACATGTTCCGTCTCTGTTACCGGGTACTGCGACACTCACAGGAAGACTACCGCAAGAACCAGGAGCACATAGCCAAGCAGTTTGGGGTGATGCAGTCTCAGATTGGCTATGACATCCTGGCTGAGGACACCATCACTGCTCTGCTGCACAACAACCGCAAGCTGCTGGAGAAACACATCACCAAGACGGAGGTGGAGACCTTTGTTAGCCTGGTCCGCAAGAACAGGGAACCCAGGTTTCTGGACTACCTGTCAGATCTGTGTGTGTCCAACAACGTGGCTATTCCTGTCACTCAGGAGCTGATCTGTAAGTGTGTGCTGGATCCCAAGAACCAAGACATCCTCATAAAGACTGAACGGCGTGTGCCCAAAGAGATTCCCAATGCCACTGAATACATGGGCATGGAGGAGTATGCTGACGATGATGAGGTGTGGCTGGTCTGGACTGACAAGACCAATGAGAAGCAAGAGAAGGGCATCAGACAACTAGCCCAGGAGGCCAGACAGGGGAACGCTCATGACGAGAACGTGCTCACGTACTACAGGTACCAGCTGAAGCTGTATGCACGAATGTGTCTGGACCGCCAGTACCTGGCCATAGATGAGATCTCCAAGCAGCTGGATGTGGAGCTCATCTTCCTGTGCATGATGGATGAGACACTGCCCTTTGACCTGCGCGCCTCTTTCTGCAGACTGATGCTGCATGCGCACGTCGACCGAGACCCCCAGGAGCTGGTCACGCCCGTCAAGTTCGCCCGTCTCTGGACAGAGATCCCCACCTCCATCACAATTAAAGATTATGACTCCAACATGGATGACTCGCGAGACAATAAGAAGAACAAGTTTGCCAACACCATGGTGTTCATGGAGGAGTACCTCAACAACGTCCTCAATGATGACTTGCCTTTCGCTGACGAGGAAAAGAACAAACTGACCTATGAGGTGGTGAGCCTGGCCAGACACCTCATCTACTTTGGCTTCTACAGTTTCTTTGAGCTGCTGAGGTTGACACGGACCCTTCTGGGAATCATCGACTGCATCCCCAACCCTTCCCTCATCAACCCCATGTTCCAGGACGATGGCAGTGGGAAGAACATGAAGCGCTCCATCCATGGTGTTGGCCAGATGATGTCCACCATGGTACTGAGCAGGAAACAGTCCATTTTTGGAGGTCCAGGCCGGAGTGCTTCCAACATAGAGGGCCAGAACCGCAGTAAGGACAGCATCGACAAACAGGACATCACTGTCATGGACACCAAGCTGAAAATACTAGAAATCCTGCAGTTTATCCTGAATGTCCGTCTGGACTATCGTCTCTCCTTCCTGCTTTCTGTCTTCAAGAAAGAGTTTGTTGATGTTTATCCCATGGCAGATGCCGATGCTACAACATCAATGGAGCAAGCAGCCACCATCAACCTGCAGCACATAGGAGAGCAGGCAGAGGCCATGTTTGGTGTGGGGAAGGGGAACAGTATTCTGGAGGTGGATGATGAGGGAGGTCGTATGTTCCTGAGGGTGCTGATCCATCTCACCATGCATGACTACCCTCCTCTGGTCTCTGGGGCTCTACAGCTGCTTTTCAAACACTTCAGCCAGAGACAGGAGGTGCTGCACACATTCAAACAGGTCCAGTTGCTGATCTCGGGCCAGGATGTTGATAACTACAAGCTGATAAAGAGCGACCTTGACCGTCTCCGCACCATGGTGGAGAAGTCTGAGCTCTGGGTGGACAAGAAGAGCAGttctggaggaggggaggggaagaaagacaagAAGGACAAAAAAGAGAATGTAGAGATGGCCTCAGAGGTTGCGACCCCCAAAAAAGAGAAGTCGGATAAGAGCAATGAGAACTACCAGAAAGTTAaagatATCTTGGAGCGTCTGAATAAGATGTGCAGCTCGGGTGTGTGGAAGAAACAGCAGAGACTTCTGAAGAACATGGGAGCCCACAAAGTGATGCTGGACCTGCTGCAAGTGTCATACGATCAGCATGACACCAAGATGCAGGGGATCATCAAGTGCACTCACCTGTTCCTGCAGAAGTTCTGCATGGGGAACCTGGAGAACCAGATGCTCCTCCATAAGAACCTCAGTCTCTTTCTCAACCCAGGActcatGGAGGCAGAGACGGTGCAGCACATCTTCAGCAATAACTACCAGCTGTGTACAGAGATCAGTGAGAACGTGCTGCAGCACTTCATCCACTGCCTGGCCACTCACGGACGCCACGTCCAGTACCTCAACTTCCTGCACACTATCATCAAGGCCGAGGGCAAGTACGTGAAGAAGTGCCAGGACATGATCATGACTGAGTTAACCAACGCTGGTGAGGATGTAGTGGTGTTTTATAATGACAAGGCATCATTTGCCACCATGCTGGAGCTGATGGCAGAGTCCAGGGAGGGGGTTCAGGAGCACAGCCCCCTGCGCTACCACATCTCTCTGGTAGAGCTGCTATCTGCCTGCGCTGAGGGAAAGAATGTTTACACAGAGATCAAATGTACCTCGCTGCTGCCCCTAGAGGACGTGGTGAGAGTGGTCACACACGAGGACTGCATCACAGAGGTGAAGGTTGCCTACGTGAACTTTGTGAACCACTGCTACGTAGATACCGAGGTAGAGATGAAGGAGATTTACACCAGCAACCACATCTGGAAACTGTTTGAGGACTTCACTGTGGACATGGCCAGGGTGTGTAACAAGAGAGAGAAGCGTCTGACTGACCCCATCCTGGAGAAGTACATCATCAATGTGGTGTTTGATACCATCAATGCCTTCTTCAGCTCCCCCTTCTCTGAAAACAGCACCTCTCTACAGACCCACCACACCATAGTAACACAGCTGCTCCAGTCTAGCATGCGTCTGCTGGAATGTCCCTGGCTGCAACAGCAACACAGAGGCCTGGTGGAGACTTGCATCCGCACCCTGGCTATGACAGCAAAGAACCGCTCCATTTCCCTGCCTCTGGACCTGGAGTCTCAGATCACCACCATGCTGAGCAGCAGTGCTCCCAATTCTCTGTCCCGCTCCAACCCCAACTACAAGAGCTCCACCCGCTCCAGCCGCCCCTCCGCCCCCAACAACCCCTGGGACTACAAGAACATCATCGAGAAGCTGCAGGACATCATCAACACCCTGGAGGAGCGTCTGAAGCCGCTGGTGAACGCAGAGCTGTCTGTTCTGGTGGACGTCCTGCATCAGCCTGAACTCCTCTTCCTGGAGGGGACGGACGCACGGCAACGCTGCGAATCAGGAGGCTTCATCTCCAAACTGATTCAGCACACTAAAGCCCTGATGAGCTCAGAGGAGAAGCTCTGTATCAAGGTTCTGAGGACCCTGCAGGAGATGCTCATACGCACACTGGACTTTGACGAGAAGGGCATTGCACTGAGGAAGGTGCTGCTACAGAACTACCTCTTCACCAACAAGAAGAACAGCAAGGGAGATCTGGTTGACCTTGGAGCAACAGGTGCTGAGCAGGAGAGAGACTGGACGGCTGTAGCTGCAGTCCAGTGTCGCCTGGACAGGGAGGGTGGCACAAAGCTCTTTACTGACCTCGTCATGAGCACCAAGAACGACAAGATCTTCCAGGAGAGCATCCAACTGGCCATATGTCTGCTGGAGGGGGGCAACACAGAGATCCAGAACTCCTTCTACAAGCTGATGATGGGGGACAACAAGTCTGAGAAGTTCTTTAAGGTCCTCCACGACCGGATGAAAAACGCCCAGATGGATATCAAGGCCAACGTATCAGTCAGCGTGGGGGAGATGAGTAACAAAGCCAATGACAACAAAGACCTGGAAACCAGCTCTGGTGGGTTGGTTCTACCTGCGACTACTCTGCCTCTCTTGGCCCCCTCCATCGCCCAGGTCACTGCCCTGGCTTCGGAGCCTGAGCAGAAGGAAGTGGAGACCGAGATGGGCCCTGCAATCATCATTATGAAACCCATCCTGCGCTTCCTCCAGCTGCTCTGTGAGAACCACAACCAGGATCTGCAGAACTTCCTTCGCTGCCAGAACAACaagaccaactacaacctggtATGTGAGACATTGCAGTTCCTGGACATCATGTGTGGCAGCACCACAGGAGGCCTGGGTCTGCTGGGCCTCTACATCAATGAGAGCAACGTGGGCCTCATCACCCAGACCCTGGAGACGCTCACAGAGTACTGCCAGGGCCCCTGCCAGGAGAACCAGACTTGTATAGTGACCCATGAGTCGAATGGCATCGACATCATCACAGCCCTCATACTGAATGACATCAGTCCTCTGTGTCGTTACCGCATGGAGATGGTTCTGCAGCTCAAGGACAACGCCTCCAAGCTGCTACTGGCTCTGATGGAAAGTCGCCATGACAACGAGAATGCAGAGAGGATACTGTTCAACCTCCGACCTCGGGAACTGGTGAAGGTGATAAAGAAAGCCTACCAGCAGGAGAGTGAATGTGAAGGTGGAGAGGTGTCACCTCAAGAGGTCGGCCACAACATCTACATCCTGGCACTCCAGCTGGCGAGGCACAATAAGATCCTGCTCAATCTGCTGAAACCTGCAAAGAGGAccaaagagggagaggagggcataTCCTCTATGTTGAACCTGAACAATCGGCCGCTCTCTCAAATGTTGAAATCTACCGTGCCGGTAGAGAGCGAGGAGCAGGACCCACTGGAATTCTATGAGCAGCACACTTCACAGATAGAGATTGTGCGTGAGGACCGCAGCATGGAGCAGATCGTGTTTCCCATTCATCCCATCTGTGAGTTCCTGACGGAGGAGTCCAAGTTCCGTGTGTTCAACACCACCGAGCAGGACGAGCAGGGCAGCAAGGTCACACACTTCTTCCAGCAGGCCTCCTTCCTCCACAACGAGATGGAGTGGCAGAAGAAGCTGCGCAGTATGCCAGTGCTGTTTTGGTTCTCTCGCAGGATGAGCACCTGGGGCAGCATCTCCTTTAACCtggccgtcttcatcaacctcaTCATCGCATTCTTCTACCCTTACGACTCaggccaagGTGCAATAGATGACTCGATGCTGTCCATGCTGTTCTGGGGTTTCCTGGGTCTGTCTGTCATGGGCATGTTTTCCAAACGCTACGGCCTCAGGCCCTTCACTGTGGCCCTCATACTGCGCTCCATATACTGCTTCGGCATCGGCCCCACTCTCATCCTACTGGGCACCCTCAATCTGATAAATAAGATAGTGTTTGTGGTGAGCTTTGTGGGCAACAACGGGACATTTATCATGGGCTACCGTGCGATGGTGATGGACGTGGAGTTCCTATACCACCTAGCCTATGTTCTGACCAGCACCCTGGGGCTCTGTGTCCATGAGCTCTTCTACAGCTTCCTGCTGTTTGATCTGATCTACCGGGAGGAGACCCTGTTCAACGTGATAAAGAGTGTGACCCGGAATGGGCGCTCCATCCTGCTCACTGCCCTGCTAGCCCTTATCCTGGTCTACCTGTTCTCCATTGTGGGCTTCCTCTGCCTCAAGAACGACTTCATCATGGAGGTGGACCCTCTGCCTCAGATCGACTCAGGAGGACATGGCAATGAGGAGGCATCACAGGACTTCCTGAACTCCTGCAGTGGAGATGGAGTCAGCTGCACTGCCGAGGCAGGACTCCCTGCTGAACCTGATGAGGAGAACAATTCGGAGCGGGCCTGTGACACTCTGCTCATGTGCATTGTCACCGTGCTGAACCACGGGCTGAGGAACGGTGGAGGGGTGGGAGACGTGCTACGCAAGCCCTCTAAAAACGAGCCACTGTTCCCAGCCCGCGTCATCTACGATCTCCTCTTCTACTTCATTGTCATCATCATCGTACTCAACTTGATCTTTGGTGTCATCATCGACACCTTCGCTGACTTGCGTAGTGAGAAACAGAAGAAAGAGGAGGTCCTCAAGACCACCTGCTTCATCTGTGGTCTGGAGAGGGACAAGTTTGATAATAAAACTGTGTCTTTTGAGGAACACATAAAGTTGGAGCACAACATCTGGAACTACCTGTATTTCATCGTGCTTGTTCGCGAGAAGAACAAGACTGACTACACAGGTCCAGAGAGTTATGTGGCCCTCATGATAAAGAGTAAGAACCTGGACTGGTTCCCCCGCATGCAGGCCATGTCCCTGGTGGTGACGGATGGAGACGGGGAGCAGAATGAAATGAGGAACCTGCAGGACAGACTGACGTCCACTATGAACGTGGTCAGCCAACTCACAGGACAGTTAACAGAGCTCAAAGAACAGATGACggagcagaggaagaggaggcagaggatgGGCTTCGTGGATGTCCAGTCAGGAGGAGCTGGTGCAGCTAGTGTAACCCCCAGTGCTGCTGGAGGAAACCACCAAATGTTCAACAAACCCTGATGTCCCGTCTTACCGCCATAGACTGGAAGAGTCCGCCGGGCCTATACATCCATCATGTGTTAAACATAGTGGTGATGTTCTTAGTTGTGACTGAGTTACTGCTGTTGGGTTCTTTGTAAATCAATGTTTTTCTTCAAGGGCCCCTTCAGTACTTCCAGTAGTCTGAAGCAATAgaggaatatctcaattgcataccTCGCgtcatctccttctcaaaaccctttggatgagaaagccagaggtccctcccctctgacaaTGGGTTTTGAGGAGGAGACGAGGTATGGAATTGAGATCCTCCCCATGTTTTTGGTCGTTTGTCCTCACAGCTATCTATTAATGGCATTTGCACTGTTGACAGACGTACCTCAGATGAGGAAATTATGGGAAATTGATTCCTGCAAAGCAGGAAGCAACATGTCCATCCTTTATATGAATGTATTTATATACACTGATTAATACAGTAGGCACATGAGTACCACAATGTTTGAGTGTCTGAAGCATGCATGTGATTTGGTTTGGAACACTTGTCACAGGGCCATTGGACTGGTTAGAGAAGTGTCTCCATTGCACTGAGAAATTGTTCTCGGACAGGCCTCAGTAAAAATATTTGATTTTAACTGTTTGTGTTTTAACTTCTTTATAACATGTCAAATCTTCCAAATAAAAAATTAAGAACTTTT

Function

GO: NA

KEGG:

id description
K04960 ITPR3; inositol 1,4,5-triphosphate receptor type 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925023 lncRNA upstream 1215 49011646 ~ 49011948 (+) True G813100
TU925022 lncRNA upstream 1551 49011334 ~ 49011612 (+) True G813099
TU924993 lncRNA upstream 6453 48962187 ~ 49006710 (+) False G813074
TU924998 lncRNA upstream 37778 48967764 ~ 48975385 (+) True G813076
TU924878 lncRNA upstream 69734 48942199 ~ 48943429 (+) True G812969
TU925049 lncRNA downstream 22251 49082324 ~ 49082584 (+) True G813125
TU925056 lncRNA downstream 24844 49084917 ~ 49085116 (+) True G813128
TU925063 lncRNA downstream 43510 49103583 ~ 49103820 (+) True G813135
TU925065 lncRNA downstream 45905 49105978 ~ 49106213 (+) True G813137
TU925068 lncRNA downstream 55610 49115683 ~ 49116087 (+) True G813140
XM_021616025.2 mRNA upstream 14878 48994635 ~ 48998285 (+) True LOC110532278
XM_021616024.2 mRNA upstream 18628 48988442 ~ 48994535 (+) True LOC110532277
XM_036988215.1 mRNA upstream 77831 48831069 ~ 48935332 (+) False klhdc8b
XR_005053268.1 mRNA upstream 79407 48909280 ~ 48933756 (+) True klhdc8b
XM_021616021.2 mRNA upstream 223418 48782956 ~ 48789745 (+) True si:dkey-32e6.3
XM_036988220.1 mRNA downstream 3615 49063688 ~ 49081175 (+) False LOC110532283
XM_036988219.1 mRNA downstream 3887 49063960 ~ 49081175 (+) False LOC110532283
XM_036988218.1 mRNA downstream 3888 49063961 ~ 49081175 (+) False LOC110532283
XM_036988222.1 mRNA downstream 3972 49064045 ~ 49081175 (+) False LOC110532283
XM_036988221.1 mRNA downstream 4033 49064106 ~ 49081175 (+) False LOC110532283
TU924996 other upstream 6453 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 53172 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 442570 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1030862 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2877431 46134731 ~ 46135732 (+) True G809685
TU925067 other downstream 55064 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 1736141 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1736247 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 2018374 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 2285299 51345372 ~ 51346494 (+) True G815767

Expression Profile