RNA id: XM_036986969.1


Basic Information

Item Value
RNA id XM_036986969.1
length 1524
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110532763
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69192510 ~ 69197824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAATATTCCTCTACCTCTTTTACACCTTGGATTTTCAGATTCCACCTGCGAAAGTACCTTTGAAGTTCAGCTACATTCTCACAGGTCATTATTTGGGGGTTGCAGTTTCTAAAACTCATTCTCTAGGAACGTTATATTTTCCTCGTTTTCGCTCACAATTGTGAAGCTGACTGACAGTTTCTGACAACTGATCGATCTTCTTTGATGTTTCTTCGGTGGCCCGCTCTGATGGACTCACTGGAGAACGTGGCGTCTTGTTTAGTGGACAGGGACTGGATTGCAGAGAAAAGTTCAGACATGGAAATGTCTTACTTTTTTCACCGGTGGATTTTTAATTGGAGTCTGAGGTAAAAAGGTCGCAGGACTTTCGTCCTGGTCTGTTTTGTTCTTTCTCTTGCTTGAGCTCGCAGCATCTTGTGTATCCATGCTGCTTTGGTTCTCGTCGTGGCCAGCTAGCATGTCTGCCGTCTTTATGTGAGGCTTGGATATTCCGTTTATTATTGTCTTTCTGTCGTGTTCTTCCAATTCAACTTGACAAAAACGAAATCTAAACTTATCCTATGCCGCTAAAACAAGTTGTAGTTAGTTTCTTTCAACAGTAATAGCCAATGAAAGACTGTTAAAACCACTTAACCCTCAATGTTGCTTTGACAAGCGAGAGAACACGCCCTCAGCGACGCCATCTTGGACATCCTGAGGAATCTACTTCCAGACTGTGGTCTGTTCATCTCAATACTTCAAAACTCCTAAACACGTCACAAATCTGGTACGTGGGTCTTTCCAGTGAGTTGGGGAAGAATGAGGAACCATGGCACAGTTTGAAACCTTGATATGGACTGTAACTATTATATTGGTGCTTGAAAGCATCGGATCCTGTATTGCATGTGGTAGAGCTGAGTACAGAATAAGGGATGAATGTTGTCCCATGTGTTCACCAGGATATCATGTACATAGTCATTGTACTACATCTACATTCACCTCCTGTGTGCCCTGTATTGACTCCACCTTCCTTGATGAGCCCAGTGGTAAAACAACATGCAACAACTGTACCACATGTGATCCAGGTTTTGGTTTGATGGTAAAGCAGCCATGTACACCTTCATCAGACACTGTCTGTGGGACACTGGAGGGGTTCTACTGTCTAGACCCAACTAAAGATGGTTGTAGAGCAGCCCAGAGACACAGCAGCTGTAAACCTGGTCAATACATCAGTCACACAGGAACAACATCTACAGATACTGTGTGTGCTGCCTGCCCTGGTAAAACTTATTCAGATGGATCATTAACATCTTGTCAACCACATACAGACTGGTGTTTGTTTATTTATGAGAAGAAGAAAAATGGTGAGAACAAGACAAAACATAGGCCCTCAAATACCTACACAGGCATCCCCAGATCAGGAAATACCAATGCTATCTGGGGGAAAGGGAAATGGAAACGATTCAAGCCCCCATCACAGTCAGTGACTCTGCATTCTGTGTTCCACTGGCTGGCTGGCCCAGCCATCTATAGTGTATCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950016 lncRNA upstream 103676 69086373 ~ 69088834 (+) True LOC110532776
TU950017 lncRNA upstream 104148 69086140 ~ 69088362 (+) False LOC110532776
TU950097 lncRNA upstream 136570 69043733 ~ 69055940 (+) True G835335
TU950082 lncRNA upstream 164006 69025560 ~ 69028504 (+) True G835320
TU950014 lncRNA upstream 180312 69005446 ~ 69012198 (+) True G835263
TU949981 lncRNA downstream 86 69197910 ~ 69221742 (+) False G835256
TU949984 lncRNA downstream 86 69197910 ~ 69268450 (+) False G835256
TU949989 lncRNA downstream 86 69197910 ~ 69221742 (+) False G835256
TU949990 lncRNA downstream 86 69197910 ~ 69269722 (+) False G835256
TU949992 lncRNA downstream 86 69197910 ~ 69269454 (+) False G835256
XR_005053340.1 mRNA upstream 103573 69084924 ~ 69088937 (+) False LOC110532776
XR_002474885.2 mRNA upstream 103573 69085681 ~ 69088937 (+) False LOC110532776
XR_005053335.1 mRNA upstream 199438 68988735 ~ 68993072 (+) False LOC110531258
XR_005053338.1 mRNA upstream 199438 68991397 ~ 68993072 (+) False LOC110531258
XR_005053337.1 mRNA upstream 199438 68991414 ~ 68993072 (+) False LOC110531258
XM_036988845.1 mRNA downstream 15925 69213749 ~ 69246132 (+) False LOC110532762
XM_036988844.1 mRNA downstream 15927 69213751 ~ 69219112 (+) False LOC110532762
XM_036988843.1 mRNA downstream 15927 69213751 ~ 69246132 (+) True LOC110532762
XR_005053345.1 mRNA downstream 63332 69261156 ~ 69267394 (+) False LOC110532770
XR_005053346.1 mRNA downstream 63335 69261159 ~ 69267394 (+) False LOC110532770
TU949445 other upstream 569671 68619916 ~ 68622839 (+) True LOC118965941
TU949456 other upstream 610100 68578897 ~ 68582410 (+) True LOC110532749
TU949373 other upstream 722001 68466559 ~ 68470509 (+) False LOC110531253
TU949377 other upstream 722001 68466559 ~ 68470509 (+) True LOC110531253
TU948768 other upstream 903985 68287215 ~ 68288525 (+) False G834235
TU950021 other downstream 41772 69239596 ~ 69244478 (+) False G835266
TU950022 other downstream 42555 69240379 ~ 69244478 (+) False G835266
TU950020 other downstream 44390 69242214 ~ 69244478 (+) True G835266
TU950033 other downstream 63347 69261171 ~ 69266474 (+) True LOC110532770
TU950024 other downstream 89452 69287276 ~ 69367788 (+) True G835268

Expression Profile