RNA id: XR_005053338.1


Basic Information

Item Value
RNA id XR_005053338.1
length 1557
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110531258
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68917184 ~ 68993072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggttagggtaatgtgtggaggctaggggttaGGGTACAGATATGGTAATGTGtggaggctaggggttagggtacagATATGGTAATGTGTGGAGGCTAGTGGTTAGGGTACAGATATGGTAATGTGTGGAGGCTAGGGGCTAGGGTACAGATATGGTAATGTGtggaggctaggggttagggtaatgtgtggaggctaggggttagggtacagATATGGTAATGTGTGGAGGCTAGGGGCTAGGGTACAGATATGGTAATGTATGTGGAGGCTAGGGTACAGATATGGTAATGTAGTGGAGGCTAGGGGCTAGGGTACAGCTATGGTAATGTGGTGGAGGCTAGGGGTGAGGGCACAGATATGGTCATGTGtggaggctaggggttagggtacagATATAGTAATGTGTGGAGGCTAGGGGTTAGCGTACAGATATGGTAATGTGtggaggctaggggttagggtacaTATATGGTAATGTGtggaggctaggggttagggtacagATATGGTAATGTGTGGAGGCTAGGGGTTAGGCCACAGATATGTGtggaggctaggggttagggtacagATATAGTAATGTGTggaggctaggggttaaggtaaTGTGTGGAGGCTAGGGGTTAGAGTACAGATATGGTAATGTGtggaggctaggggttagggtacagATATGGTAATGTGTGGAGGCTAGTGGTTAGGCCACAGATATGGTAATGTGTAGAGGCTAGGGGTTAGAGTACAGATATGGTAATGTGtggaggctaggggttagggtacagATATGGTAATGTGTGGAGGCTAGGGGTTAGGCCACAGATATGGCAAGTCCCAGAGATGATGGGGTATTATGTTTAGTTCACATGTAAGTTCTTATGAATTGTGCCCTAGAAAGAAACGCTTGCAGTAACCAAGGACAACCAAGGAACAAAGGTGTGCCACACCACTGCCCTCCCCAGTGCATTGTATAACCATGGATTCTTCTGTCAAGCACTGTACACAATAATATCGCTGCAAATAGTCATGTAGTTCTATTATACACATATTATGGGTAAATGCTAACCTATGATGCAAATAATATTCCTTATATTGTATATTTTTGAGAAATATATTCCAACATTAAAAACAAGACAAGGATGAGGTCATGTCTTTGCCACAACTTCAACATAATGCTCACCTCTTTTTTACCTGTATGACTTTATGTACAAACATAAATCAGAGAGGTGTCTAAGGCCCTATGTACTTAAACCAAAGACAAAGCACTCCTGTATTAGGATTTCATCTTTCATATTTTTAAGCTTCATGTGTTTGTATTGATACGAGTTTTGCATCGTTTTTGTAAGACATGAAGACTACTTTGTATAACAGTGGTAATATATTGTGGTCTGTTTTTCTTATTGATCTTTATATGTAGTAATATATTTTATCACATGCAGCTAGGAAAGTGAAAGTAAAAATGAAACATTGAGGAAAATCTTGTTATAtgctatttttttaaagaaagctTTGTATGCACAACTGAATATAATAAAACAAAAGTTGTGGTGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950060 lncRNA upstream 42059 68948165 ~ 68949338 (+) True G835298
TU949970 lncRNA upstream 76643 68912654 ~ 68914754 (+) True G835251
TU949642 lncRNA upstream 102379 68888595 ~ 68889018 (+) True G834962
TU949513 lncRNA upstream 185116 68768613 ~ 68806281 (+) True G834842
TU949567 lncRNA upstream 225275 68765903 ~ 68766122 (+) True G834892
TU950036 lncRNA downstream 7253 69000325 ~ 69002961 (+) True G835277
TU950014 lncRNA downstream 12374 69005446 ~ 69012198 (+) True G835263
TU950082 lncRNA downstream 32488 69025560 ~ 69028504 (+) True G835320
TU950097 lncRNA downstream 50661 69043733 ~ 69055940 (+) True G835335
TU950017 lncRNA downstream 93068 69086140 ~ 69088362 (+) False LOC110532776
XM_036988832.1 mRNA upstream 1276 68917184 ~ 68990121 (+) False LOC110531258
XM_036988833.1 mRNA upstream 1276 68917184 ~ 68990121 (+) False LOC110531258
XM_036988834.1 mRNA upstream 1276 68927202 ~ 68990121 (+) False LOC110531258
XR_005053334.1 mRNA upstream 85871 68901391 ~ 68905526 (+) True LOC118966105
XM_036988830.1 mRNA upstream 96557 68890470 ~ 68894840 (+) False LOC118966104
XR_005053340.1 mRNA downstream 91852 69084924 ~ 69088937 (+) False LOC110532776
XR_002474885.2 mRNA downstream 92609 69085681 ~ 69088937 (+) False LOC110532776
XM_036986969.1 mRNA downstream 199438 69192510 ~ 69197824 (+) True LOC110532763
XM_036988845.1 mRNA downstream 220677 69213749 ~ 69246132 (+) False LOC110532762
XM_036988844.1 mRNA downstream 220679 69213751 ~ 69219112 (+) False LOC110532762
TU949445 other upstream 368558 68619916 ~ 68622839 (+) True LOC118965941
TU949456 other upstream 408987 68578897 ~ 68582410 (+) True LOC110532749
TU949373 other upstream 520888 68466559 ~ 68470509 (+) False LOC110531253
TU949377 other upstream 520888 68466559 ~ 68470509 (+) True LOC110531253
TU948768 other upstream 702872 68287215 ~ 68288525 (+) False G834235
TU950021 other downstream 246524 69239596 ~ 69244478 (+) False G835266
TU950022 other downstream 247307 69240379 ~ 69244478 (+) False G835266
TU950020 other downstream 249142 69242214 ~ 69244478 (+) True G835266
TU950033 other downstream 268099 69261171 ~ 69266474 (+) True LOC110532770
TU950024 other downstream 294204 69287276 ~ 69367788 (+) True G835268

Expression Profile