RNA id: TU950014


Basic Information

Item Value
RNA id TU950014
length 2796
lncRNA type antisense_over
GC content 0.46
exon number 11
gene id G835263
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69005446 ~ 69012198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATTTTTTTAATCTATTATCGACAAAACCAAACAATCATACTAACAGTACTTCAATGACACACTAGTCATCTGACATCTGGACAGCTTCATTCAAATTGGCATGCCCTCAGGATGGACCACCTTAACGCCACAGAAACTTAGACCAAAAAAAAGCCAGTCAAGAGGCCAAGAACATTCACAAAATCAATCAAGATTTTTTCCCCTCCCATCCTCAATAACAATACAGAGTTACTAATATATATGTATTACATTAGGAAAAATATTATGCACGCTGTTTTGAAGTCAGTTGTCATGTATGAAAACCTCTAATAGTGTGCACTCTGCTTTCATTATTGTCCGATATCACTCATATTTGGCACGGCTGTGCTCCTGGAACAACATATGAAAGTTTAGGGTTTCAGGATGTTACACCACTAAATCAACTGGTTCATGATCCCTGGGTGTAAATGACGTGTAAAGGCCCTGTTACGCAATAATACAACTCTGTTAAATTTGGGATCTTAACCCTTTTAAATAACTCCACACTATTTTAGCACTGTTGACGTCAGGTGGCGAGCTTGCTTTGTGTGTAAAGTATCGGGAGGTAAATTACTAACCAAAATGAACTTCTCACTTAATAGCATTAATCGAATAACCTTCAGTTCAGACGCTATCTGACTGTTTTGCAGGTATTGCTATTGCAGGCACTGACATCTCTCAGATCATCGGagggagaagaaaaaaacatcAGGAAAGTGTCGTTCAGATTTTGTATCGTTACAGCGCACCACTTTATCAATGCCTCGTCTTAAATTAGTACATACAGACGTAATTAGAAGCAAATGTCCTCAAGGCAAGCAACAATGTCCAGATTACATGTGTGATTTATGGCGATATGCAATAAGATAATTAAAATAGAGTTCAGAACATCAAAGCAACCCTATTTCTTAAAGCACCTTATATACAAGATGTCGCAAGTTTGCTTCAAACGAAATTTCACAGAATTCCAGAGTCCAGACTTGATAGATTTGGTTTGGATCTTAGTGGCGATAATTGCATGCAGCAGACCCAACATTACCCCCAAGCTGTTTCCCTAACAACGCCAATGGCCTTTTCCTTTTCCAAAGTACTCTGGTTCTACAGTAGGACAAAGTGACGGGAACTTAAGGATAGGAATGATGATGGTGTCTAAGAATCGTTGACAGACATGTTCTCCACTTGGTTCTGGAGCTGGTCTCCACCTCcctgtttcttcttcttccctcCATCCTGCTGCTTCTTCTGCTTCTTGGACGTCTCCACGTCAATAGGCGCAGGCTTCACAAACTTCAGCATCTCTGTCATACCTGGAGGCATGAAATTCCGGAGTACCTCTGGAATTATGACACCCTCTTCGGTCTGGTACGTCTCCAGGATAGCACACATTACACGTGTGGTGGCACACATGGTTGCGTTGAGCATGTGCACATAGTCAGTCTTGTCCATCATCTTTTTGGTCTGTCCGTAGCGGATACGCAGCCGACGGGCCTGGTAGTCTAAACAGTTGGAGCAGGAGACCAGTTCTCTGAAGGCTGCGGAGCCTGGGAACCAGGCCTCCAAGTCCAGCTTCTTACTGGCTGCATGGTTCAGAGCACCTGAGACTATGTTGATGATGCGGTAGGGGATCCCTAGTGTCTGGTAGAACTCTTCAGCCGTCCCAATCATCTCATCCATCATCTCCCAGGACTTGTTGTCATGAGGCGAGGCAAAAACAAACTGCTCTATCTTCTCAAACTGGTGCACCCTGAAGATGCCTCGGGTGTCACGCCCGTGGGAacccacttcctgtctgaagcAGGTGGAGAGGCCGGCGTAGCGCATTGGCAGATCCTCTGGCTTCAGCCACTCGTCTCTCAGGAAGGCTGCGATGGGCTGCTCTGAGGTGGCAATCAGGTACTTCTCATCTATGGCCGTGTCCTCAGATTTCTCACTGCTCTTCCCAATCacCTTGTAAAGTTCATCATCAAACTGGCTGAGCTGAGCCACCTCCTGCATGACCTCTTTCCTCATGAAGAAGGGGGTGTAGAGCATTTGGTAGTTCTTGCTGTGGAGCATCCGCAGAGCATAATTGATCAATGCCTGCTCCAGGAAAACTAGCGGCCCTTTGAGGAAGTAGCCACGGCTCCCAGCCACTATAGCTCCTTTCTCTCCGTCGTAGCCGTCGATCATGACTACCAGGTCTACGTGGGAATACTTCTTCTGCACAGTACAGTCTCCCCAAGTGCGCTCCACTTTGTTATCAGCATCCTCATCATTACTGATGGGCACAGATGGATGCAGGAGGTTCCCGATCTCTCGCAGGTATTGAAAGCGCTCTTCCTCCAGCTTTACCCTCTCACCGTCAGATTTCTGCACTGCCTCATCTACAAGCAGACGGACCTTCTTGATCTGGGTGACCGTGAGGGGCGATAGTGTGTCTGCCGTTAGGGCCTCCAAGTTCTGGGCGTCGTCTGGGACAGAATCATCGTCATCCCCAACTGGCTCCCTCTTCTTCATTTTCTCTCCAACTGTCTTGCTGCATAAATTCTTTGCCTTGTTGAGGTTGTCGGCAGTGAAACGACATTTTCTCCATTCGGTGTCTGCGTGTACTAGTTTATCCACAAGTGACACATCTTTGAACCTTTTTCTTTGAGTTTCTCTGATTACTTCAGGATCACCGCCTTTATCGGTTCGAAATTGGTCTAAATCGAGCACCATGATGATTCCACGCTTTGATGACTGTCAGAAAACGGTGCGGAGTAACAGAGAAAAGCAAGCCGGTGTGAAAAGTACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950036 lncRNA upstream 2485 69000325 ~ 69002961 (+) True G835277
TU950029 lncRNA upstream 12456 68990443 ~ 68992990 (+) True LOC110531258
TU950060 lncRNA upstream 56108 68948165 ~ 68949338 (+) True G835298
TU949970 lncRNA upstream 90692 68912654 ~ 68914754 (+) True G835251
TU949642 lncRNA upstream 116428 68888595 ~ 68889018 (+) True G834962
TU950082 lncRNA downstream 13362 69025560 ~ 69028504 (+) True G835320
TU950097 lncRNA downstream 31535 69043733 ~ 69055940 (+) True G835335
TU950017 lncRNA downstream 73942 69086140 ~ 69088362 (+) False LOC110532776
TU950016 lncRNA downstream 74175 69086373 ~ 69088834 (+) True LOC110532776
TU949983 lncRNA downstream 184313 69196511 ~ 69246414 (+) False G835256
XR_005053335.1 mRNA upstream 12374 68988735 ~ 68993072 (+) False LOC110531258
XR_005053338.1 mRNA upstream 12374 68991397 ~ 68993072 (+) False LOC110531258
XR_005053337.1 mRNA upstream 12374 68991414 ~ 68993072 (+) False LOC110531258
XR_005053336.1 mRNA upstream 12374 68991426 ~ 68993072 (+) False LOC110531258
XM_036988834.1 mRNA upstream 15325 68927202 ~ 68990121 (+) False LOC110531258
XR_005053340.1 mRNA downstream 72726 69084924 ~ 69088937 (+) False LOC110532776
XR_002474885.2 mRNA downstream 73483 69085681 ~ 69088937 (+) False LOC110532776
XM_036986969.1 mRNA downstream 180312 69192510 ~ 69197824 (+) True LOC110532763
XM_036988845.1 mRNA downstream 201551 69213749 ~ 69246132 (+) False LOC110532762
XM_036988844.1 mRNA downstream 201553 69213751 ~ 69219112 (+) False LOC110532762
TU949445 other upstream 382607 68619916 ~ 68622839 (+) True LOC118965941
TU949456 other upstream 423036 68578897 ~ 68582410 (+) True LOC110532749
TU949373 other upstream 534937 68466559 ~ 68470509 (+) False LOC110531253
TU949377 other upstream 534937 68466559 ~ 68470509 (+) True LOC110531253
TU948768 other upstream 716921 68287215 ~ 68288525 (+) False G834235
TU950021 other downstream 227398 69239596 ~ 69244478 (+) False G835266
TU950022 other downstream 228181 69240379 ~ 69244478 (+) False G835266
TU950020 other downstream 230016 69242214 ~ 69244478 (+) True G835266
TU950033 other downstream 248973 69261171 ~ 69266474 (+) True LOC110532770
TU950024 other downstream 275078 69287276 ~ 69367788 (+) True G835268

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043290 False 2286 mRNA 0.46 11 NC_007134.7 34030550 ~ 34043651 (+)
bowfin (Amia calva) TU60514 True 1218 lncRNA 0.58 4 CM030125.1 49623810 ~ 49627767 (-)
tiger barb (Puntius tetrazona) TU60514 True 1787 lncRNA 0.39 2 NC_056703.1 31506424 ~ 31508270 (+)