RNA id: TCONS_00037781


Basic Information

Item Value
RNA id TCONS_00037781
length 1071
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_019053
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 33459524 ~ 33463894 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTCATTTCTCAAATTTTTACATCACAGTGAGTTTAGGAAAATCCCTTATCAAGATAAGTTTTTCAGACTTTTGATCAAAAATGTCTAGCGAGGGAAACGAGACACCACTAATAAGTGACCAATCTTCAGTTAACATGGGACCTCAGCCAAGAAATAAGAATCAGGCTCTGAAGGTAGCAGGAGTGACTCTGCTGGCTGGGATACTGATCGCAGGTCAGGCCTTCACTGCTTACATGGCCTACAGTCATAAAGAGCAGCTCAACACCCTGGAGAGACGAGGAGACCGCCTGCATGAGATCAGCCGTAAATCTGCCATGCGAGCCCCGCTAAAGATGCATCTCCCCATGAGCTCTCTTGCTCTGAAGTATGAGGATGACACCAAAGAGAACAAGGATTCTCCTCCCTCATCTCCCAAACCAGAGCCCAAAGTTCTAACCCAGTGCCAGAAGGAGGCTGCAGGGGAGGTCAAGAGTCTCCTGCCGTCCTTCAAGCCAAGGTGTAACGAGAATGGAGATTACCTGTCACAGCAGTGCTGGGAACAGACTGACTTCTGCTGGTGTGTGGACAAGAACGGCGTTGAGATTCCTGACACTCTGAAGGAAGGCCCCGCTCAGTGTTGGGCCCTTAATTCCGCTGACATAGTGAATGAGCCTCTGCTGAGGAAAAATGGCGAGTGAAGAGGAGCAGCGAAAACTTCCACAATATCATATTCTGGTGTCTTCATCTAACTTTTACAGCTGAACTTTCACATTTACTGTAGGTCTAAATAAAGTTTGGTttgaggtcttaaaatatctgTCTGTACATTCATATATTTTCTAGAAACCTAAACTTGTGTTTTGTATTGAAACAATTACAGACTTTAGAAGATCAGTTTCAGCAGTGTTCATGGAAAACCTCTTAACTTTATTGATTTGTactacttttgtttttattaataactttCAACTGCTTTTTCTGagtgaatatttttaaaaatgaatgaagagAGAGAACATGTATAGAAGGACAAACAAAACTGGATGATGGAGAGCTAACAGAGATcgataataaaattaattactaacc

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0002286 T cell activation involved in immune response biological_process
GO:0060907 positive regulation of macrophage cytokine production biological_process
GO:0002830 positive regulation of type 2 immune response biological_process
GO:0006955 immune response biological_process
GO:0048839 inner ear development biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:1902166 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator biological_process
GO:0048884 neuromast development biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator biological_process
GO:0001961 positive regulation of cytokine-mediated signaling pathway biological_process
GO:0009986 cell surface cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0042289 MHC class II protein binding molecular_function
GO:0035718 macrophage migration inhibitory factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990910-10 Predicted to enable MHC class II protein binding activity; cytokine receptor activity; and macrophage migration inhibitory factor binding activity. Acts upstream of or within inner ear development and neuromast development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and cytoplasm. Is expressed in inner ear and otic vesicle. Orthologous to human CD74 (CD74 molecule).

Ensembl:

ensembl_id ENSDART00000053205

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039443 lncRNA upstream 102401 33249331 ~ 33357123 (+) False XLOC_019051
TCONS_00039447 lncRNA downstream 530 33464424 ~ 33465807 (+) True XLOC_019054
TCONS_00037786 lncRNA downstream 173564 33637458 ~ 33638159 (+) False XLOC_019056
TCONS_00039448 lncRNA downstream 173564 33637458 ~ 33645997 (+) False XLOC_019056
TCONS_00039449 lncRNA downstream 173564 33637458 ~ 33646932 (+) False XLOC_019056
TCONS_00037787 lncRNA downstream 173640 33637534 ~ 33646878 (+) False XLOC_019056
TCONS_00037780 mRNA upstream 1094 33454147 ~ 33458430 (+) True XLOC_019052
TCONS_00037779 mRNA upstream 11914 33311622 ~ 33447610 (+) True XLOC_019051
TCONS_00037778 mRNA upstream 11966 33249478 ~ 33447558 (+) False XLOC_019051
TCONS_00037777 mRNA upstream 247099 33187992 ~ 33212425 (+) False XLOC_019050
TCONS_00037776 mRNA upstream 247099 33187992 ~ 33212425 (+) True XLOC_019050
TCONS_00037782 mRNA downstream 39941 33503835 ~ 33550282 (+) True XLOC_019055
TCONS_00037791 mRNA downstream 569686 34033580 ~ 34075107 (+) True XLOC_019058
TCONS_00037792 mRNA downstream 624216 34088110 ~ 34099836 (+) False XLOC_019060
TCONS_00037793 mRNA downstream 624216 34088110 ~ 34118206 (+) False XLOC_019060
TCONS_00037794 mRNA downstream 624308 34088202 ~ 34104214 (+) False XLOC_019060
TCONS_00037773 other upstream 932180 32464568 ~ 32527344 (+) True XLOC_019045
TCONS_00037769 other upstream 1361097 32092771 ~ 32098427 (+) False XLOC_019042
TCONS_00037768 other upstream 1428772 32030636 ~ 32030752 (+) True XLOC_019040
TCONS_00037726 other upstream 3472628 29986796 ~ 29986896 (+) True XLOC_019015
TCONS_00037725 other upstream 3853074 29606327 ~ 29606450 (+) True XLOC_019014
TCONS_00037783 other downstream 173189 33637083 ~ 33645997 (+) False XLOC_019056
TCONS_00037784 other downstream 173190 33637084 ~ 33646070 (+) False XLOC_019056
TCONS_00037785 other downstream 173191 33637085 ~ 33646932 (+) False XLOC_019056
TCONS_00037789 other downstream 292216 33756110 ~ 33765245 (+) False XLOC_019057
TCONS_00037790 other downstream 292242 33756136 ~ 33765239 (+) True XLOC_019057

Expression Profile

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