RNA id: TCONS_00039728


Basic Information

Item Value
RNA id TCONS_00039728
length 8823
RNA type mRNA
GC content 0.57
exon number 33
gene id XLOC_019915
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 413349 ~ 468437 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGGGGGATTTGTTGCTCTTTGTTTTCGGGTGTTTTGAGCTCGCGGGGCTCGTGGACTGTTTCTCCGTGCATGTGAGTGAGGATGCGGGACCGGGCACCGCGATCGCCGAGCTGCAGCGGGGCTCCTGCGCGCTGGACCAGCTCCTCCTGCCGCGCTTCGCGGAGACTTTCCTGCGCCCGGACGCGGGTGTGCTGACTCTCTCGAACGCTCCGAACTGCGATTCGGTTCTTTCGAACCCGTTCAGCGTGTACGCGGTCGTGGACTGTAAGGACGCGTCGGGTTTCAGACACCTTGTAACCAGCCGGTATGATGTGCACGTTCATGGAAAGAACTGCGCGAGCACGCGCAAACGGGAAAACAAGTTGGATGATGTGGAAATTATTAGTTTGACTGAGTCTTCAGAGTGCCGCGAGGCGCACAGCGCAGTTTTCCGGGTGTTTGATGTGTTACCGGGGAACCCGGCGCGCTGCAATGTAACCAGGACTTCAGCGTTTTACATGTCCGACGGATCTCTGTTTACTTCCGCTCGGCTCTGTTTCACCCGCGACTCTTTGCTGGAGTTTCAGATGCGCTGCGGGGGGCGCGCGGGCGCTGCGCATGCGCACTGGCGTGTGGGCCGCGGCCCGTTCACACAAACTCACCTGAGCAAGGTACTCAGACTGGCCGCGCGCTCAAACTCTGGGCTGctgagcaggaggaggaggaatgTCAACAATAACCCTCAGTTTCACCCGCCGATGTATCAGGTGTCTGTTCCAGAGAATCAGCCAGCTGggacttttgttgttgttttaaaagcaGTTGACCCGGATGAGGGTGAAGCCGGTAGGCTGGAATATGTCTTAGAGGCCCTGTTTGATAGTCGGTCCAACAATCTCTTTGCTGTTGACCCAGCGAGTGGAGTCGTGTCCACTGTGGAGATATTAGACAGAGAAACAAAAGACACACACGTGTTCAGGGTCACGGCAGTGGATCATGGAACACCGCGGCGTACGGCTATGGCCACCCTCACCGTAACAGTCAGCGACACAAATGATCACGACCCTGCCTTTGAGCAACAGGACTATAAAGAGAGCGTACGAGAAAACCTGGAGATCGGTTACGAGGTCCTGACTGTACGTGCAACAGATGGCGATGCTCCCATCAACGGAAACATCCTTTATCACTTGCTGAACAGCAACGGGACCAATGACGTGTTTGAGATTGATTCCCGCTCTGGGGTTATACGCACACGAGGCCTGGTGGACCGTGAAACGGTCGACTCCTACATGCTGATGGTTGAAGCGAACGATCAGGGACGAGATCCAGGCCCTCGCAGCGCTACAGCAACGGTCCACATCGTCGTGGAGGACGACAATGACAATGCGCCACAGTTCAGTGAAAAACGCTACATCGTTCAGGTTCCCGAAGACCTGACACCTAACACCGAGATCCTTCAGGTTACAGCGACTGACCAGGACCGCGGAAATAACGCCGTGGTTCATTTCAGCATCATGAGCGGGAACACGAGGGGTCAGTTCTACATCGACGCTCAGACAGGTAAGCTGGACCTGGTGAGCCAGCTGGACTATGAGATGAATAAAGAGTATACACTTCGCATTCGTGCACAAGATGGCGGGCGGCCTCCGCTCTCCAACATCAGCGGCCTCGTCACAGTGCAGGTGCTGGACATTAACGATAATGCACCGATATTTGTCAGCACTCCGTTCCAGGCGACAGTGTTGGAGAACGTTCCTGTGGGATATTCTGTCATCCACATTCAGGCCGTAGACGCTGACGCTGGAGATAATTCACGCTTGGAATATCGCCTCACAGAGACCACGGCCAACTTCCCGTTTACCATCAACAACAGCACCGGCTGGATCGTCGTAGCTGCAGAACTGGACAGGGAAACTGTGGACTTTTATAACTTCGGAGTGGAAGCGCGAGATCACGGAGCGCCAGCCATGTCTTCATCTGCTAGCATTAGCATGACCATTCTAGACGTCAATGACAACAACCCTGAGTTCACACAGAAGGCCTACTACATGCGTCTGAATGAAGACGCCGCTGTCGGAACAAGTGTGGTCACAGTGTCCGCAGTCGATCAGGATATTAACAGCGTGGTGACGTATCAGATCTCCAGCGGGAACACCAGAAACCGGTTCTCCATCACCAGTCAGAGCGGCGGAGGCCTGATTACGCTCGCTCTACCGCTGGACTACAAGCTGGAGAGACAGTACGTCCTCACGGTCACCGCGTCTGACGGCACACGCTTCGACACAGCTAAAGTTTACGTAAACGTCACAGACGCCAACACACACCGACCGGTCTTCCAGAGCTCGCATTACACCGTCAACATCAACGAGGACCGACCTGTGGGCACTACAGTAGTGATGATCAGCGCCACAGACGAGGATACGGGCGAGAATGCTCGAATAACCTACATCATGGACGACAGCATCCCACAGTTCAACATTGACTCAGATAGTGGTGCCGTGACCACACAGATGGAGCTAGACTACGAGGATCAAGTGTCCTACACGCTCGCCATCACAGCTCGAGACAACGGCATCCCGCAGAAATCTGACACCACCTACTTGGAGATCCTAGTGAACGATGTTAATGATAACTCTCCGGTCTTCCAGCGCGACCGCTATTTGGGCTCCGTCATGGAGGACATCCCCGTGTTCACCAGTGTCCTGCAGGTCTCCGCAACTGACCGGGACTCTGGCCTCAATGGTCGCGTCTTTTACACCTTCCAGGGCGGAGAAGATGGTGACGGTGACTTCATCATCGAGTCTACCTCAGGGATCGTACGAACTCTGCGTCGTCTCGATCGAGAAAATACTGCCATCTATAACCTGCAAGCCTTCGCTGTGGATAAAGGAGTTCCTGCGCTCAAGACTGCTGTTGACATGCAGGTGACGATTTTAGATGTGAACGATAACCCGCCTGTGTTCGAGAAAGATGAGTTCGATATCTTCGTGGAGGAGAACAGTCCCATTGGGCTCGTGGTGGCGCACATATCTGCGTCAGACCCAGACGAAGGCAGCAACGCTCAAATCATGTACCAGATCGTGGAAGGCAACATCCCCGAGGTCTTCCAGCTGGATATTTTCTCTGGAGAACTCACAGCTCTTACCGACCTCGACTACGAGACGCGTGCAGAGTATGTGATTGTAGTTCAAGCTACGTCTGCTCCGCTAGTCAGCAGAGCCACGGTACACATCAAGCTCATCGATAAAAACGATAACGTCCCAGTCCTCAAGAACTTCCAGATTATCTTTAACAATTACGTGACGGATAAGACCAACAGCTTCCCTTCAGGAGTGATCGGGCGTATCCCAGCACAGGACCCCGATGTGTCCGATCAGCTACACTACAGTTTTGAAGCCGGAAACGAGCTGAAACTGGTGATTCTAAACCAGAGCACTGGCGAGATCCGACTCAGCAGAGCCCTGGACAACAACAGACCCCTGGAGGCATCCATGAAGATCTCCGTCTCCGATGGTGTGCACTCGGTGTCGGCTCAGTGTCTGCTGCAGGTCACCGTCATCACGGATGAGATGCTCTCCAACAGCATCACCCTGCGATTGGCCAACGCGTCTCAGGAGCGCTTCCTCTCGCTGCTATTggctcagttcctggagggcgtGGCCAGCGTGCTGTCGGCGTCCCGTGAGGACGTGGTGGTCTTCAACATTCAGGACGACACAGACGTGAGTGCCGGCATCCTGAACGTCAGCCTGTCGGTGGCGCTGCCGGGTCAGGGGTCACGGGGCCGCGGGGTCAGTCAGGGGTCAGAGGTGGAGTTTTTCGGCTCTGAGGAGCTGCAGGAGCGGCTGTACCTAAACCGCAGTTTGCTGGCGCAGATCTCCTCGCAGGAGGTGCTTCCGTTTGATGACAACATCTGCCTGCGCGAGCCCTGCGAGAACTACATGAAGTGTGTGTCCGTGCTGAAGTTCGACAGCCTGGCGCCCTTCGTGGCGTCCGACACCATCCTGTTCCGGCCCATACACCCGATCGCGGGCCTGCGCTGCCGATGTCCGCTCGGCTTCACCGGAGACTACTGCGAGACGGAGATCGACCTGTGCTACTCCAGACCCTGCGGAGCCCACGGAGTCTGCCGCAGCCACGAGGGCGGATACACCTGCCACTGCATGCAGGACTACACAGgtgagCGGTGCGAGATCTCCTCGCGCTCGGGCCGCTGTGCTGAAGGTGTGTGTAAGAACGGCGGGACGTGTCTGAATCTGTTGGTGGGCGGCTTCAGGTGCGAGTGTCCATCCGGAGGCTTCGAGAAACCCTTCTGCCTGCTGAGCTCCAGGAACTTCCCTCCGCAGACCTTCATCACCTTCAAAGGACTCAGGCAGCGCTTCCACTTCACACTCTCGCTGTCGTTTGCGACCCGCGAGCCCAACGGTCTGCTGCTGTATAACGGACGCTTTAACGAGAAACACGACTTTATCGCCATGGAGATCGTCAACCAGCAGATCCAGCTCACCTTCTCCGCAGGAGAGACAAAGACCACGGTTTCGCCTTTCATCAAGGGCGGAGTCAGCGACGGACACTGGCACACTGCACACGTGCACTACTACAACAAGCCGGTGCTGAACCGCGCAGGTCTTCCTCAGGGGCCGTCGGATCAGAAGGTTGTCGTGGTAACGGTTGACGACTGTGACTCGTCAGTCGCTCTGCGCTTTGGCCATGTGGTGGGAAACTACTCCTGCTCCGCCCAGGGCAGCCAATCAGGATCCAAGAAGTCTCTGGATCTGACGGGTCCTCTGCTGCTCGGAGGCGTCCCCAAACTGCCTGAGGAATTCCCCGTGCAGAACCGGCAGTTCATCGGCTGCATGAAGGACCTGCGCATTGACGAGCGGCACGTCGACATGGCCGGATTCATCGCTAATAACGGAACGCTACCCGGATGCTCTGCGAAGCGTAACTTCTGCAATAATAACCCGTGTCTGAACGGCGGCAGCTGCGTCAGTCTGTGGGGGTCGTTCCGCTGCGACTGCGCGCTGGGGTTCGGAGGACGCAACTGTGAGAAAGTGATGTCAAACCCGTTGCGGCTCCAGGGTAAGGGTCTGCTGTGGTGGGCTGATCTGGCTTCGGTGATGACTCTTCCCTGGCACATGGAGTTCATGTTTCGCACACGACAGCCGACAGCCACAGTGATGCACATGAGCTCAGGACAGCAGCACAACTTCACCATACagcTAAGAGAGGGCTTCGTGGTGACATCGGTCCAGCGGGGCGAGGACTCGGTCGTGTCTCGTGTTGATGATGTCACAGTGAGTGATGGCCAATGGCATCACGTCTCTCTTGAACTCAAAGGCCCGACGACAGGTGGCGTCACGGCAACACTGAGCCTTGACTACGGTCTCTACACGtcctcTATGGATCTGGACTCGAAGCTGAAGGGTGTAAGGCTGAAGACTCTGAGCGTCGGTGGCATCTCGGACGGCAGGAATCGTGTGATTGGTGGATTCAGAGGATGCATTCAGGGTTTGCGTATTGGCGGCGACTCCTCGACTCCTGCATTTCCCAGCATGCCCCAGGCGCGTGTGCTGAACGTGGAGTCGGGCTGCAGTCTGCCGAACACCTGCGGATCGAACCCGTGTCCGGCTCACAGCGACTGCAAAGACGACTGGGATGCGCATTCCTGCAGATGCCACACCGGTTATTATGGCAACAGTTGTACCGACGCCTGTGCGCTGAACCCCTGCGAGCACCAATCAGCATGTAGCAGGAGGTCAAGCTCCGCCCACGGATACACCTGCAGTTGTCCTAGCAACTACTTCGGCCAGTACTGCGAAAAAAAgacgGATTTGCCGTGTCCGCGTGGCTGGTGGGGTGAAAAGTCATGTGGTCCGTGTAACTGTGACACGACTAAAGGATTCGATGCCGACTGTAACAAGACCAATGGCGCCTGTCGCTGCAAGGATAATCACTTCCGTCCGCCGTCGAGCGACACGTGTGTGTTGTGCGATTGTTACGCGGTGGGCTCTCTGTCGCGTGTGTGTGATCGCGCCGTGGGTCAGTGTCAATGTAAGCCGGGTGTTATCGGGCGTCAGTGTGACCGCTGTGATAACCCGTTCGCTGAGGTCTCGTCCAGCGGATGTGAAGTGATCTACGACAGCTGTCCTCAAGCTATCGAAGCTGGAATCTGGTGGCCGCGGACCAAGTTCGGTTTACCGGCTGCTGTCGCCTGTCCTAAAGGATCCATCGGAACTGCGATCCGTCACTGTGATGAACACAAGGGCTGGCTGTCGGCGAATCTCTTCAACTGCACGTCTGTGAGCTTCAGCAAACTGAAGACACTGTCGGAGCGTTTGGTGCGAAACGCGTCTCTGATGGACTCCACTAACGTTCAGCAGACGGCGGCGCTGCTGTTTAACGCCACAAAGAACACCAGAGAGTTTTACGGCAGCGATGTGAAGATCGCGTTTCACCTGCTGCGCGCAATACTGCGACACGAGAGCCAGCAGCAGGGCTTCAACCTCACTGCCACACAGGATGTGCTATTTAACGAGCACCTGATGCATGTGGGCAGTGCCATCCTGAGGGCGGAGACCCGCGGCCACTGGCAGACCATCCAGCAGACGGAGAGCGGCACCGACACACTGCTGCGCCAGTTCGaggagtacacacacacactcgcacagaACATGAGGAGGACATACCTCAACCCCTTCACCATCGTCACGCCCAGCATcgTGATCTCCATTGACCGTCTGGAGAAGATGAATTTCGCGGGGGCGAAGCTGCCACGCTATCAGTCTCTGCGCGGGCCACGCCCACTGGACCTGGAGACCGCTGTCACTCTGCCCGACTCCGTCTTCAGCCCCGCCCCCGAGGGTAAAGGTCACCGGCATCACAGTGAGCCAATCATAGAGCCCGGCAGAAACCACACAGCCAATCGGAAGAGGCGTCACCCGGACAAGCGGCAAGAGGACGCCATCGCCAGCATCATCATCTTCCACACCCTAGCGACACTACTGCCGGAGAGATACGACACCGACAAGAGGAGCCTCAgggtccCCAAGCGACCCGTCATCAACACCCCTGTGGTCAGCATAACTGTTCATGATAACGAGGAGCTGCTGCAGCACACACTGGATAAGCCAATCATAGTGCAGTTCCGGCTGGTGACCACCGAGGAGCGCTCTAAACCCATCTGTGTGTTCTGGAACCACTCTATAGTggcgGCCAGTCCGGGCGGCTGGTCCTCCAAGGGCTGTGAGGTGGTCTTCAGAAACAGCACACACATCAGCTGCCAATGTTACCACATGACGAGCTTCGCTGTGCTCATGGACATCTCCCGCAGAGAGAACGGGGAGATCCTGCCGGTGAAGCTGGTGACGTGGAGTTCGGTGGGAGCGACGCTGttcttcctcctcctcaccatCATCTTCCTCTCCTGCCTGCGCGCCGCAAACAGCAACAAGACCAGCATCGCCAAAAACGGCTCCTCTGCGCTCTTCATCGCGCTCCTCGTCTTCATCCTGGGCATCAGTCAGGCCGACAACCCGTTCGTGTGTACGCTGATGGCCATCCTGCTGCACTTCTTCTGGCTCTGCGTGTTCTCCTGGCTCTTCCTCGAGGGCCTGCATGTGTACCGGATGCTGAGCGAGCTGCGCGACATCAACTACGGCCCCATGCGGTTCTACTATTTGATTGGCTGGGGGGTCCCAGCCTTCATCACGGGGCTGGCGGTGGGACTGGATCCTGAGGGTTACGGGAACCCGGACTTCTGCTGGCTCTCGCTCTATGACACCCTGATCTGGAGCTTTGCGGGACCCATTGCGTTTGTGGTGTCTATGAACGTGTTCCTGTACATCATGGCATCGAGAGCGTCGTGTTCGCTCAGACAGAAGAGCTGCGAGAAGAGAGACGTGCCGGCggcggGTCTGCGGACGGCGTGTACCGTGTTGTTCCTGGTGACGGTGACGTGTCTCCTGGCGCTGCTGTCGGTCAACAGTGACATCATCCTGTTCCACTATCTGTTTGCAGGATTCAGCTGTGTTCAGggtgTGTTCATCTTCTTCCTGCGCGTGGTGTTTAATCAGGAAGCTCGAGATGCCATGCGCTACTGCTGCAGCGGGAAACGGCCAGATCACATGATCAAATCCAAACCCGCAGCGTTCCTCTGCAGCAGTAATTATGTGGACGGTGGTCTGTATCATCTGCCCTTCGCTGAGTCCAGTGTGTCTCTGAACGGCACACACAGCAGCAAAACACAGCAGAACTACATGCCCTTCAGCCtccgAGGAGACATTATGAACAGCAGCCACCTGAGTCTGAGTGAACACAACACACTGTTCAAGGACAAAGAGCAGATGaacgATCCGGACTCTGACTCGGACAGTGATCTGTCAGAGCTGGAGGATGATCAGAGCGGCTCGTACGCGTCCACACACTCCTCCGACAGtgaagaggaggaagagggcGCCTTTCAGGAGGAATGCTGGGAGAATCTGGCAACCAGCGGCTCCGGCAAACCTCACGgtGTGTGTGAGGGCGAGATCAGAGCCACAGACGAGACCGTGGACAAAGCAGAGGATCATGGGACGGAaaacctgctgctgctgctgcccaGTCTgccacacacacaaccacacaaagGAATCCTGAAGAAGAAGCAGCTGTCGCCGATCGCCGAGAGAAACGCCATCAACCGCATCCACAACCAGCTGTCAGGAGACTCCGCCTCCTCACGAGGCCCCTCCTCAAATGAGGACAGAGGGGGCGGAGCCAGGAGGAACCATGTCAATGGGGCATCAGTGAGCGGACTAATGAAAACACTCGACAACGACTCGTCTGAATCTGAGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0021754 facial nucleus development biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0008104 protein localization biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04030 G protein-coupled receptors
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-070122-2 Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Acts upstream of or within several processes, including cell-cell adhesion; epiboly involved in gastrulation with mouth forming second; and facial nucleus development. Located in plasma membrane. Is expressed in brain; eye; and ovary. Orthologous to human CELSR2 (cadherin EGF LAG seven-pass G-type receptor 2).

Ensembl:

ensembl_id ENSDART00000082453

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042005 lncRNA upstream 104145 240168 ~ 309204 (+) True XLOC_019910
TCONS_00042004 lncRNA upstream 126160 219167 ~ 287189 (+) True XLOC_019909
TCONS_00042002 lncRNA upstream 352981 51545 ~ 60368 (+) True XLOC_019902
TCONS_00042003 lncRNA upstream 356609 53914 ~ 56740 (+) True XLOC_019903
TCONS_00042001 lncRNA upstream 385505 24421 ~ 27844 (+) True XLOC_019901
TCONS_00039739 lncRNA downstream 196440 662103 ~ 663854 (+) True XLOC_019919
TCONS_00042006 lncRNA downstream 337841 803504 ~ 808457 (+) False XLOC_019923
TCONS_00039751 lncRNA downstream 341790 807453 ~ 808457 (+) True XLOC_019923
TCONS_00042007 lncRNA downstream 345937 811600 ~ 817627 (+) True XLOC_019924
TCONS_00042008 lncRNA downstream 457848 923511 ~ 938827 (+) True XLOC_019927
TCONS_00039727 mRNA upstream 2805 396840 ~ 410544 (+) True XLOC_019914
TCONS_00039726 mRNA upstream 35113 374479 ~ 378236 (+) True XLOC_019913
TCONS_00039725 mRNA upstream 36241 374478 ~ 377108 (+) False XLOC_019913
TCONS_00039724 mRNA upstream 58063 344763 ~ 355286 (+) True XLOC_019912
TCONS_00039723 mRNA upstream 73726 336256 ~ 339623 (+) True XLOC_019911
TCONS_00039731 mRNA downstream 42627 508290 ~ 535454 (+) True XLOC_019916
TCONS_00039732 mRNA downstream 92624 558287 ~ 567923 (+) False XLOC_019917
TCONS_00039733 mRNA downstream 95113 560776 ~ 564230 (+) False XLOC_019917
TCONS_00039734 mRNA downstream 102070 567733 ~ 584610 (+) False XLOC_019917
TCONS_00039735 mRNA downstream 103902 569565 ~ 581689 (+) True XLOC_019917
TCONS_00039750 other downstream 337841 803504 ~ 807514 (+) False XLOC_019923
TCONS_00039759 other downstream 552938 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039761 other downstream 573885 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039775 other downstream 784125 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other downstream 784576 1250239 ~ 1251660 (+) False XLOC_019938

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00485805_00522951.mRNA False 8597 mRNA 0.56 26 CI01000186 485805 ~ 523767 (-)
bowfin (Amia calva) AMCG00014020 True 993 mRNA 0.66 3 CM030125.1 49647798 ~ 49653162 (+)