RNA id: TCONS_00042051


Basic Information

Item Value
RNA id TCONS_00042051
length 655
lncRNA type read_through
GC content 0.32
exon number 2
gene id XLOC_020166
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8375766 ~ 8495359 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgGAGCATTAACTACTTTTGCTTAATTCACTGATATGTGAAAACTTCATAACTGAAATACAAATAATTGAGAAGGAAACATGCACAGTTTATTAAATCACACTTCACATTATAGCAAACCTATTTAATGATCATTCTAACCagtagttaaagggatagttcaatcaaaaatgacaattctgtcatcgtttactctgctttcacttgtcacaaaccagtTTCATCTctttagttgaacacaaaataggaCATTTTTAAGAAATGTTGGACACCTTTAACCACTGACCTCCATAATATCAGCTGTTcctataatgaaagtcaatattTTCAGCTTTCTAACATTTTACATAgaaaaaagatacaaataaaggtttgtaaccacttgagtatgagaaaatattgagtaaatgttCCTTTTTGGGTAAACAGTCTCTTCAATAGACATCATTGTAATGCAACAACACTTATCAAACATTGAGATCACAGACAAAGTTAATTACAACACAAGAAAGAACAGACTTCTGTGGCCCTCCGCTGAATAAATAGTCAAAACCCTTTGTTTCTCAGACTAAACAATAGCTGCACTCGCATCCTCTTTACTAATGATTGCAATTCATTAACATGCACAGGTTTaagaaaaaagcttttcttatcA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042050 lncRNA upstream 19257 8339205 ~ 8356509 (+) True XLOC_020164
TCONS_00042049 lncRNA upstream 60898 8297633 ~ 8314868 (+) True XLOC_020161
TCONS_00042046 lncRNA upstream 402897 7677231 ~ 7972869 (+) True XLOC_020152
TCONS_00042045 lncRNA upstream 403422 7676352 ~ 7972344 (+) True XLOC_020151
TCONS_00041875 lncRNA downstream 74746 8570105 ~ 8571394 (+) False XLOC_020171
TCONS_00041876 lncRNA downstream 74929 8570288 ~ 8571231 (+) False XLOC_020171
TCONS_00041877 lncRNA downstream 75262 8570621 ~ 8571339 (+) False XLOC_020171
TCONS_00041878 lncRNA downstream 75706 8571065 ~ 8574907 (+) False XLOC_020171
TCONS_00041879 lncRNA downstream 75709 8571068 ~ 8574807 (+) True XLOC_020171
TCONS_00040127 mRNA upstream 5913 8365905 ~ 8369853 (+) True XLOC_020165
TCONS_00040126 mRNA upstream 44097 8328377 ~ 8331669 (+) True XLOC_020163
TCONS_00040125 mRNA upstream 48794 8313513 ~ 8326972 (+) False XLOC_020162
TCONS_00040124 mRNA upstream 48794 8313513 ~ 8326972 (+) True XLOC_020162
TCONS_00040123 mRNA upstream 101387 8272393 ~ 8274379 (+) True XLOC_020160
TCONS_00040130 mRNA downstream 41479 8536838 ~ 8543629 (+) True XLOC_020169
TCONS_00040131 mRNA downstream 56454 8551813 ~ 8553791 (+) True XLOC_020170
TCONS_00040132 mRNA downstream 101615 8596974 ~ 8601775 (+) True XLOC_020172
TCONS_00040133 mRNA downstream 117103 8612462 ~ 8748801 (+) True XLOC_020173
TCONS_00040134 mRNA downstream 132705 8628064 ~ 8634560 (+) True XLOC_020175
TCONS_00040122 other upstream 110117 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 931561 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040109 other upstream 931721 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040108 other upstream 931744 7439527 ~ 7444022 (+) False XLOC_020142
TCONS_00040103 other upstream 1427260 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040135 other downstream 199737 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040140 other downstream 271008 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040142 other downstream 290808 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040167 other downstream 864540 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 1291708 9787067 ~ 9789804 (+) True XLOC_020205