RNA id: TCONS_00040128



Basic Information


Item Value
RNA id TCONS_00040128
length 903
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_020167
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8407707 ~ 8440399 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTCGTTTTCTTCTCCAGGTGTGTCTGATGCTGTTACAGAGAAACCAGTGATGGATGGAGAATCAGTCACTCTAGAAATACAGAGAGACGGGGACATCGAGTGGAAGTTTGGAGATCGGAACATTCTCATAGCTCAGATCAACAGCAATAAAATCACACTGTATGATGAGGCTCTTGGTGGGGTTTTCAGAGGCAGACTAAAGCTGGatcagactggatctctgaccatcaacaaCACCAGAATAAAAGACTCTGGGGATTATAAAGCAATCAACACCAGATCAGCACAGCTACTCGTCACATTCAAGCTGACTGTCCATGCTCCTCCCTCGATTCCAGTCATTTCCACTTACTTATCTCCATGCCCAAATACATCACCAGAGTCCAgatgtgtgctgctgtgttcagtggtgaatgtgagatttgtgagtctctcctggtacaaagaaaacagtgtattgtccagcatcagtgCATCTGACctcagcatcagtctctctctacctctggaggtggaaATTCAGGATAAaaacacctacagctgtgtgGTGAAGAATCCCATCAGCAACCAGACCACACATCTGGACAtcaacacacactgtaaaacatgctcaGGTATGGCAGTTGTGATACTAACACTTATTAGTCAGCTCCAcaataaataaggaaataatgtaaacatttttacacTGCTAACAGTTTAACACTTTATCCCTCATAAGATGGCCTCTGTCGTAATGCTGTCATCCTATTGGCTCTTTCGGCTGTGCTGGGCGTTGCCGTGGTGGCTCTACTGGTTTATGAGTTCAGATCCAGATGTCTTCGAAAGGAGGAGAGTGTGCAGGAAGAAGCTAAACACACCTATACATCTCTAGattttacacagtaaaaaataaaggatcac

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142977

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042050 lncRNA upstream 51198 8339205 ~ 8356509 (+) True XLOC_020164
TCONS_00042049 lncRNA upstream 92839 8297633 ~ 8314868 (+) True XLOC_020161
TCONS_00042046 lncRNA upstream 434838 7677231 ~ 7972869 (+) True XLOC_020152
TCONS_00041875 lncRNA downstream 129706 8570105 ~ 8571394 (+) False XLOC_020171
TCONS_00041876 lncRNA downstream 129889 8570288 ~ 8571231 (+) False XLOC_020171
TCONS_00041877 lncRNA downstream 130222 8570621 ~ 8571339 (+) False XLOC_020171
TCONS_00041878 lncRNA downstream 130666 8571065 ~ 8574907 (+) False XLOC_020171
TCONS_00041879 lncRNA downstream 130669 8571068 ~ 8574807 (+) True XLOC_020171
TCONS_00040127 mRNA upstream 37854 8365905 ~ 8369853 (+) True XLOC_020165
TCONS_00040126 mRNA upstream 76038 8328377 ~ 8331669 (+) True XLOC_020163
TCONS_00040125 mRNA upstream 80735 8313513 ~ 8326972 (+) False XLOC_020162
TCONS_00040124 mRNA upstream 80735 8313513 ~ 8326972 (+) True XLOC_020162
TCONS_00040123 mRNA upstream 133328 8272393 ~ 8274379 (+) True XLOC_020160
TCONS_00040129 mRNA downstream 49001 8489400 ~ 8491260 (+) True XLOC_020168
TCONS_00040130 mRNA downstream 96439 8536838 ~ 8543629 (+) True XLOC_020169
TCONS_00040131 mRNA downstream 111414 8551813 ~ 8553791 (+) True XLOC_020170
TCONS_00040132 mRNA downstream 156575 8596974 ~ 8601775 (+) True XLOC_020172
TCONS_00040133 mRNA downstream 172063 8612462 ~ 8748801 (+) True XLOC_020173
TCONS_00040122 other upstream 142058 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 963502 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040109 other upstream 963662 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040108 other upstream 963685 7439527 ~ 7444022 (+) False XLOC_020142
TCONS_00040103 other upstream 1459201 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040135 other downstream 254697 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040140 other downstream 325968 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040142 other downstream 345768 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040167 other downstream 919500 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 1346668 9787067 ~ 9789804 (+) True XLOC_020205

Expression Profile


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