RNA id: TCONS_00040131


Basic Information

Item Value
RNA id TCONS_00040131
length 1449
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_020170
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8551813 ~ 8553791 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcttacaatataatatcacgtttgtacaatatacttttcacgtttgtacaatataatatcacgtttgtacaatataatatcacgttcttacaatataatatcacgtttgtacaatatacttttcacgttcttacaatataatatcacgtttgtacaatatacttttcacgttcttacaatataatatcacgtttgtacaatataattatcacgttattACGTGAAAACTTTATTGTTTAGGCTACGTTAACCTGGTGCGATTAGAGCGTGAGAAAATGTCTCGTTTAACTGAGTTAATCAAGTTTTATTTTATGCTTGGATTGAGACATGGGGAAATTTTGCAGCTACTGATCAGCTTGGACAATGTTGTTATCAGCATGCGGACACTGAGAAGGAACCTAAAACACATGGGGCTGTACAGGAGGAAGAATGAGTCTGATCCGATGGAAGTGGCTGCATTTCTTATTGATCAGCTCGAGGGACACGGGAGGCTCCATGGATACAAACTACACCACCTGAATTGCATTCAAGCGGGTTATGTTGTCACTCAGAGTACTGTCCGTCATTTGCTTAAATATCTAGATCCTTATGGTGTTGAGCAACGACGCAAAAATCGTCTAATCCGACGGATGTATGTTAATCCTGGACCAAATTTCATGTGGCACGTCGACTCCTACGACAAACTGAAGCCCTTTGGAATCTGTATAAATGGAGCCATTGATGGTTTTTCGAGAGCTATGATTTGGCTTCATGCCTTTTCAACAAACAGTGATCCCAAAATCATTGCTGGGTATTTCATAGCAGAAGTTGAAAAGAGGCTTGGGACACCTTCCCGGATTCGCTCCGATCTGGGAACAGAAAATGTCACAATGGCAGACATGCAAAGATTCTTGCGATGGAGTACGGATCATAACGTCACTAACTGTTTTATTACTGGGTCTAGTAATCACAATCAGCGAATTGAAAGCTGGTGGGCCTTTCTGAGACGGCATCATGCTCAGGACTGGATGAATCGTTTCCAGGATCTAAAAGACAATGACAGTTTCTCTGGATGCTTTTTGGACAAGCAGCTCATATTGTTTACATGCCTGAACGTCATTGAGgaaGAGCTCCAGCAAGTTGTGCATCTGTGGAACACCCACATTATACGCAGAAGCAGAAGTGCAGTTGCCCCAAGTGGACGTCCGATTCTGATGTACACCATCCCTCATCTTTTTGGAGGACAGGATTATCTAAAAGAGGTTTCTCAGAATTCAGTGGATGTTTGTAAGCAAGAATGCCAACAGAGAGGACCTTATACCTGTGATGAAACAGTTTTCAGCTTGTGCTGCCTTATAATGTCAGAGAACTTCTTAACTCCACCAAGTACAGCAGATGAATCCATTGAACTGTATCTTTTCCTGAGAGCCTATATCCTGAAGGACTTACAACTTGGGCACTTTTACTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-987 No description available

Ensembl:

ensembl_id ENSDART00000129690

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042051 lncRNA upstream 56454 8375766 ~ 8495359 (+) False XLOC_020166
TCONS_00042052 lncRNA upstream 56454 8428143 ~ 8495359 (+) True XLOC_020166
TCONS_00042050 lncRNA upstream 195304 8339205 ~ 8356509 (+) True XLOC_020164
TCONS_00042049 lncRNA upstream 236945 8297633 ~ 8314868 (+) True XLOC_020161
TCONS_00042048 lncRNA upstream 625781 7921536 ~ 7926032 (+) False XLOC_020157
TCONS_00041875 lncRNA downstream 16314 8570105 ~ 8571394 (+) False XLOC_020171
TCONS_00041876 lncRNA downstream 16497 8570288 ~ 8571231 (+) False XLOC_020171
TCONS_00041877 lncRNA downstream 16830 8570621 ~ 8571339 (+) False XLOC_020171
TCONS_00041878 lncRNA downstream 17274 8571065 ~ 8574907 (+) False XLOC_020171
TCONS_00041879 lncRNA downstream 17277 8571068 ~ 8574807 (+) True XLOC_020171
TCONS_00040130 mRNA upstream 8184 8536838 ~ 8543629 (+) True XLOC_020169
TCONS_00040129 mRNA upstream 60553 8489400 ~ 8491260 (+) True XLOC_020168
TCONS_00040128 mRNA upstream 111414 8407707 ~ 8440399 (+) True XLOC_020167
TCONS_00040127 mRNA upstream 181960 8365905 ~ 8369853 (+) True XLOC_020165
TCONS_00040126 mRNA upstream 220144 8328377 ~ 8331669 (+) True XLOC_020163
TCONS_00040132 mRNA downstream 43183 8596974 ~ 8601775 (+) True XLOC_020172
TCONS_00040133 mRNA downstream 58671 8612462 ~ 8748801 (+) True XLOC_020173
TCONS_00040134 mRNA downstream 74273 8628064 ~ 8634560 (+) True XLOC_020175
TCONS_00040136 mRNA downstream 147447 8701238 ~ 8702901 (+) True XLOC_020177
TCONS_00040137 mRNA downstream 175178 8728969 ~ 8733727 (+) True XLOC_020178
TCONS_00040122 other upstream 286164 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1107608 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040109 other upstream 1107768 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040108 other upstream 1107791 7439527 ~ 7444022 (+) False XLOC_020142
TCONS_00040103 other upstream 1603307 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040135 other downstream 141305 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040140 other downstream 212576 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040142 other downstream 232376 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040167 other downstream 806108 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 1233276 9787067 ~ 9789804 (+) True XLOC_020205

Expression Profile

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