RNA id: TCONS_00041877


Basic Information

Item Value
RNA id TCONS_00041877
length 534
lncRNA type intronic
GC content 0.38
exon number 3
gene id XLOC_020171
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8570105 ~ 8574907 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagTATTGGATGCCTGATTGCAGTTCAACTCTAAACTCAGTTTGGaccagctgatcagtgtcttcagtaGTACCACAAGCTACTGGGCAGATGTGTGGACAGCTATGAGCCAAATTTAGGACGTTTGGTTTTTAGGTAATACCAGTGACAAAGTATTCACAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaactttactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcTTTACAGTTTAGATACAATCAAATGTCCAAACCATCTCTGAGTGAATGACATCAAGGAAACAGGATCAAAAGATCTTTCATTATAGACCGTTTCATAGTTGGTTTTATTTTTCAGGTCCTCCTGATCATTCTGTTCTCTTGGTTGTGAGGATGTGCAGAGGCTGTATTTGTCCGTGTTAAAAGACTTGTGCAGCTGTATCCAGACA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042051 lncRNA upstream 75262 8375766 ~ 8495359 (+) False XLOC_020166
TCONS_00042052 lncRNA upstream 75262 8428143 ~ 8495359 (+) True XLOC_020166
TCONS_00042050 lncRNA upstream 214112 8339205 ~ 8356509 (+) True XLOC_020164
TCONS_00042049 lncRNA upstream 255753 8297633 ~ 8314868 (+) True XLOC_020161
TCONS_00042048 lncRNA upstream 644589 7921536 ~ 7926032 (+) False XLOC_020157
TCONS_00042053 lncRNA downstream 49959 8621298 ~ 8761630 (+) True XLOC_020174
TCONS_00042054 lncRNA downstream 125920 8697259 ~ 8699930 (+) True XLOC_020176
TCONS_00042055 lncRNA downstream 209394 8780733 ~ 8808460 (+) False XLOC_020180
TCONS_00042056 lncRNA downstream 229116 8800455 ~ 8808460 (+) True XLOC_020180
TCONS_00042057 lncRNA downstream 250158 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00040131 mRNA upstream 16830 8551813 ~ 8553791 (+) True XLOC_020170
TCONS_00040130 mRNA upstream 26992 8536838 ~ 8543629 (+) True XLOC_020169
TCONS_00040129 mRNA upstream 79361 8489400 ~ 8491260 (+) True XLOC_020168
TCONS_00040128 mRNA upstream 130222 8407707 ~ 8440399 (+) True XLOC_020167
TCONS_00040127 mRNA upstream 200768 8365905 ~ 8369853 (+) True XLOC_020165
TCONS_00040132 mRNA downstream 25635 8596974 ~ 8601775 (+) True XLOC_020172
TCONS_00040133 mRNA downstream 41123 8612462 ~ 8748801 (+) True XLOC_020173
TCONS_00040134 mRNA downstream 56725 8628064 ~ 8634560 (+) True XLOC_020175
TCONS_00040136 mRNA downstream 129899 8701238 ~ 8702901 (+) True XLOC_020177
TCONS_00040137 mRNA downstream 157630 8728969 ~ 8733727 (+) True XLOC_020178
TCONS_00040122 other upstream 304972 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1126416 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040109 other upstream 1126576 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040108 other upstream 1126599 7439527 ~ 7444022 (+) False XLOC_020142
TCONS_00040103 other upstream 1622115 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040135 other downstream 123757 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040140 other downstream 195028 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040142 other downstream 214828 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040167 other downstream 788560 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 1215728 9787067 ~ 9789804 (+) True XLOC_020205

Expression Profile

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