RNA id: TCONS_00042060


Basic Information

Item Value
RNA id TCONS_00042060
length 1973
lncRNA type sense_over
GC content 0.33
exon number 4
gene id XLOC_020185
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8979955 ~ 8996337 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACAAACATCGATAATCATCAGAGTGGAAATTATGTATTGGAGATCAACAACAGCACAATGGGCTTAAATAGAACATACTACATTGCTTTGATCGGTGAGTAGATTCTAAAGAAACGGTGAAAGAAGGAAATCCTGTCAATCTACGCACTGGGCTTATTGAAATTAAGGGTTATGATCTGGTTTTGTGGAAGACTAAGGATGTTACTGTGGctgaaatcaataaaaacaaaaataaattcttAACACTTGATAAAGGTGATACGAGATATGGTGGCAGACTGGATTTCATTCAACAGTCTGGAAATCTCATCATCCGTGACTCGAGAACAACAGACTCAGGAGATTATGATTTACAGATGAACAGCAGCACATACTCCTTACAGAGGACCATCCGTGTTACTGTTAACAATTCAGGTGTGGCTACAGGTGCTGCAACAGGAATCGTTGTTGGTCTGCTTGTGCTCCACTGGTGTCTGTAGCTGTAATTCATCAAAACATCAGCAAAATAGCGGTAAGTATTACAGTAGATGCTGCAGAGTAAATTGATTAGCAAATCCAATTAAGTCTTATAATAGCAGTATTGTATGTGCTTTTGAGATGCGAAACTGCTTATTAAGGAATTTAATTTGCTGATAATAAGTAATATATGATGCTTTCATTCCTAATGGCGTAGATGCAGTATTGAGCCTGGGCTtactttacatggacatcagtatccTGATTATTTACTTTATTCCATATAAGACGGATTTAAAGTGTTTGTGGGTGTGAGTTGTCTTTAGAATATTTCTTTCATGTTTCGCTTTTACATATTATAGTTTATACACTGAATAATGCCACACAACGTTACATTCCTAAGTGACATCCTCGAACATTCCCTCCAGAATTTTGCACATCAACACTCGTTGGTGTAGGACCATATAGAGTTTCGGGTGTTTAAGCTTCAAGTGCTGTTAATTGTTTGTCATGCTATTCACGCAAACAGATGACAGCAGATACTAATTCTTGCTCATTGCACTCTTTTGTTTGCCATATTGTTGACCACCGTTTACATTGTATAACAGATTGTCTTAATAACGTTAATATCAGAAGGttgttgtccatgtaaatgtactgaaGCTGttcattttgtgttattttatgaaAGGAACACTCCTCTTTTTTTTGAAAGTAGGTTAATTTTataactcccctagagttaaacatttgagttttaccatttttgattccattcagctgatctctgtgtctgggaaagtttttttttttctttttagcttagcttagcatagatcatcgagtcagattagaccattagcatcttgctcagaAATgaccaaagatttttttttttgataattttcctatttaaagcttaactcttctgtagttaaattgtgttctaatactgactgaaaatgaaaagttattattttctagGCCAATTGAATGAgcctattttttaaaaagtggagtgttcctttaagtgtTTGACTAAATAAGCCTAATGCAGCATGTTGTACTGTATAAGATATTGCGAGAAGCAATCTAAAGCTAAATATGTATATGTGCCTTTATTTTTTGATACTTGCATTTTTACATTCCACATTGTTTTGTATGTCATGTACTTTTGTGTTTATTATCTAAagattttaagcattttgaaaaaACAACATTTGGACCATTGGGgagcaataaataaatgtattagtattattattgctattattattggaAACAAAACCTTGTTAGAACTTGCTGTTTATAGATgttcttaatctttttttttttcttgttcacatTTCTCACTGCACCCCAGTCtctaattcattttttatttgttaaacatttcattcattcctcTTTTGATCTTTTATAAACCTCTGTTACTACATGACAGgcagtgtattttattttatcagttaAAATCTGTATCAGTGTTATAGTTATTAATTAAAAGCTTGATTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041881 lncRNA upstream 33602 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00041880 lncRNA upstream 93013 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00042058 lncRNA upstream 132620 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00042059 lncRNA upstream 132620 8849129 ~ 8854534 (+) True XLOC_020182
TCONS_00042057 lncRNA upstream 149431 8821497 ~ 8837723 (+) True XLOC_020181
TCONS_00041882 lncRNA downstream 69754 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00041883 lncRNA downstream 97676 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00042061 lncRNA downstream 280692 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00042062 lncRNA downstream 326425 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00041884 lncRNA downstream 345123 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040143 mRNA upstream 177658 8799855 ~ 8809496 (+) False XLOC_020180
TCONS_00040144 mRNA upstream 178810 8800432 ~ 8808344 (+) False XLOC_020180
TCONS_00040141 mRNA upstream 198961 8772363 ~ 8788193 (+) False XLOC_020180
TCONS_00040138 mRNA upstream 216797 8753092 ~ 8770357 (+) False XLOC_020179
TCONS_00040139 mRNA upstream 217683 8753365 ~ 8769471 (+) False XLOC_020179
TCONS_00040146 mRNA downstream 6758 9003090 ~ 9009188 (+) True XLOC_020186
TCONS_00040147 mRNA downstream 13164 9009496 ~ 9057108 (+) False XLOC_020187
TCONS_00040148 mRNA downstream 31552 9027884 ~ 9032861 (+) False XLOC_020187
TCONS_00040149 mRNA downstream 37954 9034286 ~ 9040190 (+) False XLOC_020187
TCONS_00040150 mRNA downstream 43288 9039620 ~ 9043956 (+) False XLOC_020187
TCONS_00040142 other upstream 200861 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 217761 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 287921 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 721505 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1542949 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 363567 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 790735 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1162826 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1497923 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1557396 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU143195 True 13929 lncRNA 0.37 5 CI01000024 8338150 ~ 8352309 (-)