RNA id: TCONS_00040151


Basic Information

Item Value
RNA id TCONS_00040151
length 1722
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_020187
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9009496 ~ 9057108 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTGAGTCCTGCTGCTGATGAAGTCTGTCAGTTCGTGACTAGAATTGTGGGTAAAAACCCATTACTCCAAAAAGAACTGAAGCTGAGCGAACTTACACTAGACTTTAATAAAGTCAGTCAGCTTGCTGCTCTAGTGCTTGATAAACACTGTAAACTGAGCTCAATTCAacTGAATAATAACAGCATCACAGAAGAAGGTTGTGCTGCTTTGACTTCAGCATTTAATTCAAACCCTTCACACCTGATAGAGCTGGATCTGAGTGGAAATAAACTTGCAGATTCGGGAATGAAGAATATCTGTTGTCTGCTGCAAAATGTTCAGTGCAGATTGGAGAAAGTGAAaCTTTCACGCTGCAATATAACTGCAGAAGGTTATAAAGCTCTGGCCTCAGCTCTGAAATCAAACCCTTCACACCAGATAAAGCTGGATCTCACTGGAAATTATCCTGGACCATCAGGATTATCGTGGTTCTTTAAGTTATTTGTTGGTGATATGGGTATATTAAAGAACATCAGGTAATTACAGGAtttaattatttccaaataatACTGAATTGCAATTTAAAGATAATCAATACATCACACAACTGATTTTAACAAATTTGCTGCTGCTACTgacacattgtaaaaaataaattgtcatcTGTCATTGCTTCCCCAATCTCGAAATTAGGTAGAGTCATCATACTTTGGAATTTAATCACACTGGACCCTGAATGATTGAATTAAAAAAGCAGAACAGTTGTAACTGTGATGTCACTGCAACAAAATGTTGTCATTTTCTCTCATTTCTGTAGCTTTCTAAGCAGTCCTGATGCAGTAGAAGCATATGATTACCTTACAGATGCTTTGGGCACCAATCCACTACTACTGACAGAACTGGATCTGAGCAAAGTGGCAAAAGACTACAACTGGGAGAAACTTTCTGCATTTTTGCTGGACTCTTGTTGCATAGTGGAGAAAATAAGgcTAAATAATTGTGAGGTGACAAACAAAATGTGTTCAGTTCTTGCTACTGTTCTCTCCAAAAATAAACTCCTGAAAGAGATGGACCTGAACAGGAGCCCTCTGCTGGATTCAGGTGTCAAAAAGATCTGTGATGGACTGAAGAAATCTACGCTTAAAATACTGAATCTTTCAGACTGCAGTATTAGTGGAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGATTTATCACAGTACAAATGTAAAACATTGAGCATCAGGTTTTTTCAAGGTCCTGCTGAAGAAACTTATCAGTATTTGATTCGTGTCTTCAAACAAAATCCATTAATCTCAAAGGAGCTGAATCTGAATGCAACCAAACTAGACCTAGAAAAAGTGAATCAGCTTGCTGTTCTACTGCAGGATAAACACTTTAGAATCAACAGACTTCAGCTTAGTAAATGTGGTCTAACGAAGGAAAGCTGTTCAGTTCTTGCTTCAGTTCTCAGTTCAGACTCCAGCAGTCTGAAGGAACTTGATCTGAGCAAtaataatctgcaggattcaggagtgaagcagCTCTGGAATGGATTAAAGAATAACAACTGCACACTGGAGAAACTTAAGTGAGTTCAGGGAAGCACTAACTTCAGGGTTCCCACACTTCTTAAAAGTACTTATGGATTAAAAGCCTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184966

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042060 lncRNA upstream 44249 8987154 ~ 8996332 (+) True XLOC_020185
TCONS_00041881 lncRNA upstream 87029 8927365 ~ 8953552 (+) True XLOC_020184
TCONS_00041880 lncRNA upstream 146440 8886048 ~ 8894141 (+) True XLOC_020183
TCONS_00042058 lncRNA upstream 186047 8838425 ~ 8854534 (+) False XLOC_020182
TCONS_00041882 lncRNA downstream 16984 9066086 ~ 9066418 (+) True XLOC_020189
TCONS_00041883 lncRNA downstream 44906 9094008 ~ 9096110 (+) True XLOC_020188
TCONS_00042061 lncRNA downstream 227922 9277024 ~ 9279332 (+) True XLOC_020192
TCONS_00042062 lncRNA downstream 273655 9322757 ~ 9323817 (+) True XLOC_020194
TCONS_00041884 lncRNA downstream 292353 9341455 ~ 9343000 (+) True XLOC_020195
TCONS_00040149 mRNA upstream 391 9034286 ~ 9040190 (+) False XLOC_020187
TCONS_00040148 mRNA upstream 7720 9027884 ~ 9032861 (+) False XLOC_020187
TCONS_00040146 mRNA upstream 31393 9003090 ~ 9009188 (+) True XLOC_020186
TCONS_00040145 mRNA upstream 44244 8979955 ~ 8996337 (+) False XLOC_020185
TCONS_00040143 mRNA upstream 231085 8799855 ~ 8809496 (+) False XLOC_020180
TCONS_00040152 mRNA downstream 77 9049179 ~ 9056802 (+) True XLOC_020187
TCONS_00040153 mRNA downstream 11597 9060699 ~ 9096248 (+) False XLOC_020188
TCONS_00040154 mRNA downstream 19979 9069081 ~ 9071211 (+) False XLOC_020188
TCONS_00040155 mRNA downstream 42811 9091913 ~ 9094070 (+) False XLOC_020188
TCONS_00040156 mRNA downstream 61896 9110998 ~ 9131530 (+) False XLOC_020190
TCONS_00040142 other upstream 254288 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 271188 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 341348 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 774932 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040110 other upstream 1596376 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040167 other downstream 310797 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040182 other downstream 737965 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 1110056 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 1445153 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 1504626 10553728 ~ 10558972 (+) True XLOC_020230

Expression Profile

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