RNA id: XM_021624268.2


Basic Information

Item Value
RNA id XM_021624268.2
length 2729
RNA type mRNA
GC content 0.44
exon number 7
gene id ca4a
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58076921 ~ 58101536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACCCCCTTAGAAGAAGAATGGATCACATTTAATAACGAACTCATTGTGTTCCCCTGCGCCGCTCGAGCCTGACAGAGACGCACTCCAAAATGCAGCGGCATCTAATCGTACCGATTTTTTTTGCATCCTTTTTGAAGATCTGCACCGGGGCAGGACCTGAGAAGTGGTACCATGCCAACAAAGACTGTGAAGGCAGAGCCCAATCCCCCATCAACATCGTCCACAGGAAGACCCTACCAGATGAGCGCCTCACACCCTTCCAGTTCAGAAAATACCAGGATTCCTTCAGTGGCCTGATCAAAAACAATGGACACTCTGTTCAAGTGAATGTGCCTCACCAACCGTATGTCATTGGTGGAGACCTGGAGACGCCATATAAGGTAGTGCAGTTTCACCTGCACTGGGGAAAGAACGGAGGACCAGGGTCAGAACACACTATCGACGGAGAGCAGTACCCCATGGAGCTGCATATTGTTCACATGAATGAGGAATACTCAACATTGGAAGATGCCCTGAAAGACCCTATAGGAGTTGCAGTCCTTGGATTTTTCTATGAGGAATCACTCAGTGCCAACAGAAAATATGACCCCGTTGTAAAAGCCCTCCAGCGCATCATGATGACTGGTGCCAATGCAACTCTGGTGTCAGTTTCTCTGGAACAGCTGATTCCTCCCCAGCAGAACCTAAGCAACTACTACCGTTACAAGGGCTCGCTCACCACCCCCGGCTGTACCGAGTCTGTGATCTGGACTGTGTTCGAGAAGCCCATCCCTCTCAGCAGAGACCAGCTGCGGGTGTTCTCAGACCTCCAGTTTAAGGATGGCAAGCCTATGGTGGGCACATACCGGCCGGTGCAGCCCCTCAATTGCCGCGTGGTGTACAGGTCGGGAGGCGCTGTGGTAGTGGCCAGCACTGCAATCCTCTTGGCCTCCGTCACCATGGCGATGGGATTATCACAGCCCAACTAGAAGAAGGAAGGCATTCTGAGCGAGCCGCACCACGACATGCATGAACACAATGAGTTCTCAAAACAAAAAACCAAACAACCAACTGACAAACTAAAGTACAGCACCAACCAACAGCCATGCCCTAAACATTCAGCCTGAAAACCAACATGCCCCAGGCCCTTACGATACATCATAGTGATTCATGAGTTCTAGAGTTCTTGAATTATCGAGTTCTGTAGCTCAAGTTCTGAAGTTCACAAGTCCTACAGTCCATAGGTtcaacctccctccctgtccaaTGTCAGATCAATTTAGAGTCCTCAGCCTAAATTTACAATACAAAATGTGAGGAGCCTCTGCTCAGTGCTCAGGTCGTTGGGTCACTGCACTAGAGTCTAAACATAGACGTCAATAAATCCATGACCTAGTTGGTATTAGACTGGCACGTGATCGTGTTCTTAGAACGGAATGTGTGAATGGTGGGTCATAGCTAATAATAGATAGCACTCATAAATACTCTCCAGTTCAAacctaggagaggaggagagagagatgccaTGGTCTCATGAGGCAAGTGACAGGGGGATTCTGAAGACTCAGTTTCTAGAAGCTAAACACAGTAGCGTTTAAGATAACTAACTCATTCATTGATTAATAAATAGATGAATCAATTGATTTGAAAAATGGACTCATTGATTGATCCTTATTGAACCGTTGTCATTACAGTGTTCTGACCAATTATCCATATCAAATGTTTAGCATTGATCTGCATGTTCTGTCATGCTGGAATCTTGCTGTACAGTACCATACAGACTGTACAACTGTAGCACAGCCTTCTACCCAGCCACCATGGACACTTCAGTAACGTTATACTCCTTCTCCACCAGCTAGGCCAACTAAACTGTCTCAGGTTCATCTTTGCGAACATGCGACTAGGTTCGTGGCTTGGATTGCAGGGTCTCGGATGCATTGAATTATGCCCACTGTGAATTATTACTACATTCAATATTTTGACTTATCATTTTGTTTATTCACATGGCTTCTATCTAGCTAATTCAAGCAAGATATTTGTTTCTTGAGTTTCTTGTGAATAAGACAAGATTGAAGTGGGAATATATTAGAAATATTCCATTGTTTCATAACGCACCAATGTTATATTTCTATACTCTTGACATTTGTACACATGtatttatgtactgtatgtgtcacgcctgctcccgcttcccctctctggcgctcgagggcaccAGACTGCCCTTCaatacgcacacctgtcaccatcattacgcgcatcagcactcactggactcacctggactcctttactttgttgattgcccctctatatctctctgctcctcagtttgttccccgtgtcagcattGATGTCGTTACGTTTTCCCCTGTCCAGATGCTGTCCTTGTTTGTTTCTTGTCTATTatccattaaatgttcactccttgcacttgcttctcgtctcccagcatCGGTCGTTATGTGTATATTGACATATAAAGACACACTGTTGATGTTATTTATATATATCTAGGTATTTAAAAGTTTATATATCGACATCTATCAGAAAGAAGAACCAACGCAAAAAAGTTTCATTGACTGCATTATCAAGTGGTTTCTGACCAATTCAAAATACCTGTACTCTTGGAATGATCTATGTTGACGTTCAAAATTATTGAAtagttttgtttgtttatttgtaatGCTTGAAAATGTTATAAGTGATATGGAGAATGTGTTCCGATTGAACAATAAACTACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1241971 lncRNA upstream 13562 57994286 ~ 58063360 (+) True G1091964
TU1241944 lncRNA upstream 126473 57950185 ~ 57950449 (+) True G1091938
TU1241765 lncRNA upstream 407966 57668705 ~ 57668956 (+) True G1091783
TU1241763 lncRNA upstream 413736 57661859 ~ 57663186 (+) True LOC110537840
TU1241752 lncRNA upstream 425858 57650520 ~ 57651064 (+) True G1091771
TU1242066 lncRNA downstream 59706 58161242 ~ 58202692 (+) True G1092052
TU1242085 lncRNA downstream 103174 58204710 ~ 58204964 (+) True G1092071
TU1242086 lncRNA downstream 103572 58205108 ~ 58205773 (+) True G1092072
TU1242088 lncRNA downstream 106613 58208149 ~ 58208834 (+) True G1092074
TU1242089 lncRNA downstream 107882 58209418 ~ 58210303 (+) True G1092075
XM_036937872.1 mRNA upstream 5351 57967312 ~ 58071571 (+) False LOC110537841
XM_021624270.2 mRNA downstream 58422 58159958 ~ 58184449 (+) True LOC110537844
XR_005035046.1 mRNA downstream 114606 58216142 ~ 58222215 (+) False LOC118937686
XR_005035047.1 mRNA downstream 116330 58217866 ~ 58222215 (+) False LOC118937686
XR_005035045.1 mRNA downstream 116484 58218020 ~ 58222215 (+) False LOC118937686
XR_005035043.1 mRNA downstream 116636 58218172 ~ 58222215 (+) False LOC118937686
TU1241907 other upstream 162090 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 958995 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1323975 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1350919 56725607 ~ 56726003 (+) True G1091217
TU1237658 other upstream 3796201 54274306 ~ 54280721 (+) True LOC110538908
TU1241903 other downstream 114619 58216155 ~ 58222190 (+) False LOC118937686
TU1244093 other downstream 1440022 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1929467 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 2284128 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2595151 60696687 ~ 60714012 (+) True LOC110539079

Expression Profile