RNA id: XM_021624297.2


Basic Information

Item Value
RNA id XM_021624297.2
length 2295
RNA type mRNA
GC content 0.43
exon number 8
gene id rab28
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58575601 ~ 58625910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatttacaccatctcagcagctatcttagaaatataactttgctctgtgcttctcTGAGCATGCACTtcgtagcctataggctatggataATTTGAATGTTTTCTTTTGTAAAGACCATTAATGCATGATGAATAGGCTAGGCTAAGCTATGTAGAGCGTTTTCGAAGGTGTAGCTAGGCTACAGGTTGATGCACATTAGGTACATCATGTGGGGGAAGAACTTTATTATTTAAGGAATGGTAAATACTTAAATGGCGAGCCTACATTTATTTATAGGAAAGAGCGCCTCTCCACCTTTGACCTGGATTACCATAGCAACAGGGACGCGTCACCTATTGTCACTGATGTGACTGGTCAGGTCCTGCTAGGACTTGTCCATTGTTAAGCAGTGTCattattaaaaatatattttttcaaccTCCTTTATTAGCTAACCTTGATGATAAAGAAAATATAAAAGCTGTAACATCAAATGTACAAGTATTTCCCGATAAAGTGTTTGTTAATAACAGGCTTACAAAATATAAATGGAACATGCCTGGCAACAATAGTATCTGGTGAAATGGCGTCTGGTTACCTAGTGCTCGGTTTATTTTAGCTATTTGATTAGCAAGCTATATTCAATAACCTTTGACTGTGAATAGAAGTTCATTCTCATTAGAATAAATAACGTCATTGTTATATATTTCAAAATGTCTGACTCAGAAGAGGACAGTCAAGATAAGCAACTTAAAATTGTAGTCATCGGGGACGGCGCATCAGGGAAGACGTCCCtcgccaccaggtttgcacaggAGGCCTTTGGGAAACAATACAAACAAACCATTGGCCTTGATTTCTTTCTGAAGAGAATAACTCTGCCAGGCAACATGAATGTTACTTTGCAAGTGTGGGATATTGGAGGTCAATCGATTGGAGGGAAAATGCTGGATAAATATGTCTACGGGGCTCAGGGTGTTCTTCTAGTGTACGACATTACAAACTACCAGAGCTTTGAGAATCTGGAGGACTGGTACGGCATGGTCAAGAAGGCCAATGAAGAGTCAGACGTCCAGCCTGTGGTCTCACTGGTGGGAAACAAAATTGACCTGGAGCACATGAGGACAGTGAAGGCTGACAAACACCAGCGCTTCTGCCAAGACAACAGCCTCATCAGTCAGTTCGTATCAGCCAAGACCGGAGACTCAGTGTTCCTGGCATTCCAGAGAGTGGCTGCAGAGATTCTGGGGGTGAAGCTCAACAAAGCAGAGATTGAGCAGTCCCAGAGGATCGTGAAAGCTGAGCTGGTGGACTACCATCAGGACGAAGTCCCCGTTAGACAGGAGACCAATCAGAGCAAAATCTGTTCGGTTCAGTAGTTGGAACGTGTGGTGAAGGCCGACATCGTGAACTACAGTCAAGAACCTGTGGCGAGGACAGTCAACCCCCCGCGCAGCTCCATGTGTGCggtacagtgaccccctctctcccccacctcccctcttGCCCCTCCACAAACTGACGATAGCAGTGAGGGCTTCTGACCAGCAGGCTGCCcctaacacactggcccatagCCAAAGCAGGGGAATTGAGCCAGCTTGGTTTATTCTgctgcacgcacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacaccttctctctcAACGCACAAGTCTTGAGAAAGGCTTTATATCAGTATTTCCTTGAGGGTTTTCAGGGTCATCGGATATGTTAAGATTTGaatgtgaggatctctctgtatgtACAGTTTGTATTTATAAAGGGACCCCACAGTATAGTCCTGGCTTCAATACATTTCATATATTTTCATGAATGATTTCTTGAGTAGTAATCAGCTTTGGTTGCAGCATACGTCTGTTTAAACATGAAGTTAGGCTGAAAGCAAATGGGCCCTCCACTTTTTCAGCAATATATTTTTAGCAACTGTTATTCTTTTGTCATTTTTCTCCCTTCTACTGTCTTCATTATTCAATTATTCTTCAAAGGACCATTTttgattgtttgtttgtatgtatgtatgtatgtattcaaCAAAAatttaaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaattaaagatcctaGAAATTGTCCATACGCACAGAAACGTATATTTCTATCAAacattgtgcacaaatttgtttacatccctgttcgtgagaatttctcctttgccaagagaatacaaccacctgacaggtgtagcatatcaagaagctgattaaactgcatgatcattacacaggtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1243428 lncRNA upstream 70533 58504796 ~ 58505068 (+) True G1093326
TU1243335 lncRNA upstream 115920 58425346 ~ 58459681 (+) True G1093252
TU1243330 lncRNA upstream 154370 58415787 ~ 58421231 (+) True G1093248
TU1243321 lncRNA upstream 160417 58402466 ~ 58415184 (+) True G1093243
TU1243452 lncRNA downstream 2368 58626825 ~ 58627165 (+) True G1093349
TU1243518 lncRNA downstream 8131 58632588 ~ 58632818 (+) True G1093411
TU1243522 lncRNA downstream 13364 58637821 ~ 58638142 (+) True G1093415
TU1243532 lncRNA downstream 27702 58652159 ~ 58652382 (+) True G1093425
TU1243632 lncRNA downstream 37128 58661585 ~ 58661852 (+) True G1093520
LOC110538918 mRNA upstream 29004 58545146 ~ 58546597 (+) True LOC110538918
LOC110539153 mRNA upstream 45382 58528290 ~ 58530219 (+) True LOC110539153
XM_021624273.2 mRNA upstream 288973 58274018 ~ 58286628 (+) True LOC110537848
XM_036937881.1 mRNA upstream 302918 58226073 ~ 58272683 (+) False LOC110537846
XM_036937892.1 mRNA downstream 66660 58691117 ~ 58824569 (+) False LOC110538919
XM_036937893.1 mRNA downstream 66660 58691117 ~ 58824569 (+) False LOC110538919
XM_036937895.1 mRNA downstream 66660 58691117 ~ 58824569 (+) False LOC110538919
XM_036937899.1 mRNA downstream 66660 58691117 ~ 58824571 (+) False LOC110538919
XM_036937894.1 mRNA downstream 66661 58691118 ~ 58824566 (+) False LOC110538919
TU1241903 other upstream 353411 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 660769 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1457674 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1822654 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1849598 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 917101 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1406546 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 1761207 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2072230 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2192034 60816491 ~ 60818897 (+) True G1095209

Expression Profile