RNA id: XM_021624273.2


Basic Information

Item Value
RNA id XM_021624273.2
length 2785
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110537848
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58274018 ~ 58286628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCAGTAGCAGGACGTGTTCATTGTACAAGCTATTCTGAAAGAATTACCGCGGCTGTTGAGGTGAAGTCTATGAAATACGTGATGTCTTCAAAATTGTTTAATCAGTGAAAGACGATTGAAGTGTTCCGATTTCGTGTGATATGTGCACCGTTTTAGCGCTATATGTACGAATGATAGAAAAGTAACGGTTGCGTGTTATCAGTTTAGGAATTTCGTTCGCTAGCAGTAGCTACTTAGCTAGCAAGCCACCTTGAGGTCCTGTCTCTTTCTTGACATTCTAGCCTGTATTGTGGTATGGGTTCCTAGCTTGACGACGAAACTCAGTACAGTGTCCTTTCATTACCTTTTCGCATTGGTTTAATATAAAATCAGTTACGACGATAACGATTGTCTGTAGAAGAAAGTGGCCATTCAAGGACGACAGAACGTTCTCAGTGGCTTTACAAGAAGATCCCCAACCCAACTATCATGAACGGGTTCAGCACAGAAGAAGACAGTCACGATGGACCTCCGGCTCCACCGTTTTACGGCCAGACTTGTTGTTTGATTGAGGACGGTGAGCGCTGCGGACGATCAGCTGGAAACGCTTCCTTCAGCAAGCGGATCCAGAAAAGCATATCGCAGAAAAAACTAAAGCTGGACATCGACAAAAGTGTCCGACACCTCTACATATGCGACTTCCACAAAAACTTCATCCAGAGTGTCCGTAACAAACGGAAGAGGAAGACGAGTGACGACGGAGGGGAGTCTCCTGATCATGATGTGGAGGTGCCAGAGGTGGATCTGTTCCAGCTTCAGGTGAACACGCTGAGACGCTACAAGAGACACTACAAGCTCCAGACCAGACCTGGCTTGAACAAGGCCCAACTGGCTGAGACTGTCAGTCGCCACTTCCGGAATATCCCCGTGAACGAGAAGGAGACTCTCACATACTTTATTTATATGGTGAAGAGCAGCAAAAGCCGACTGGACCAGAAATCAGAGGGCAGCAAACAGCTGGAATAAAGGCCACCAATAAGTCTTGGACATGAACACGTGTGTTTGATGAGGTGTTTCCGCCAGGCGGGCTAATCTGATTTCAGACTGTTGTCAAGACTCTCCGCAGGGTGATGTAATTCTGTAATGTGAATATGCCGATATGTACAAAACACGACAAGTATGAAGATATCAGCAACACGATAGAATGCAATTTCTGAGAACTGCCTTAAAGATTTGTTTGTATTTTGCATGGACCGTTAAGAACTTGAAGAAAGGCTTGTGTCCAACCAGAGTGTGTGCAAACATAATATTTCAATAAACTGGTCATGGAGCATTTTGTGAATGAAAAGATGGTGGATAAGGTTTTGGGAAGCGTTGCACATTTTCTGGTGTCCAACTAGAATTAATCAattaaggcccgagggggtgtggtctatggccaatataccacggctaagggctgttcttatacaTGACGcaaagcggagtgcctggacacagcccttagccgtggtatattggccatatcacACAAACCctagaggtgccttattgctattataaactggttatcaacgtaattagagcagtaaaaatacatgttttgtcatacccgtggtgtacgtctgatataccacagctgttgGCCAATCAACATTCCGGGCTCGAACAACCCAGTTTTATAATACTCATCCAGTGGTATGATATACATGGGAAGACTGAAGTTGAATGATGCAGCATTTTGGCCCTGACCCTTTTTTACATTGACTTGACCTGCTCTTTCCCGTCTaatacactgaaacacacacatactgcagaGTGAAATGGCGTCTCAGTGAACACCAAGCTCTTTTCAAGTATTGGTGGAAATATTACGTCTGACTCTTCTTTACTACATTTTCTACTTTTTTGTGAGATGTCAGTACTTTAGTTCATCTTTGATTGTCAGGTCTCTGTGAAGTTGTCTCTGGTGGAAAGTAACTTTCAGTCTGTATTCATTTTCATGGTTTCAGCTTTTGAGACTAATTTAAAGCAATTAATTGAACTTGTTCATTAGGGgtttaaaatgcattattattactTCTACTCTTATATTATTTCAGAAGAATTGTTGCTGTACTAACACAAACACGTAGAACGTCTCAACTTGAGCTCAATGAACCATATTTGAACCACCTAAATAGTTTTCAGGGCAGCACCCAAAGCACTGGCTGGACTTTGCCTTCGTGTTCACAATACATTTGTTCTATTCCATTGCAATGTATTTCTGTGGAATCATGTCACCCTCAGCTGTCAAGTCTATTTCCTCTCCTGGCACAGTGTTGAAATGATGTGTCTCGTGGGCACACAACCACACGATAACACTACGTACCGCTTCTAGTCGCTGGTTGAAGATGGGagttgtaataaatatataatatgtttTTGCTTTCCCTTAGTCACTATTTGGGGTTTTGTTCACTTCAACACTGCTGTGTGCTCGCTGTTTTGTTTGTCAGTGGTCTCTTCACAGATGATGCTATGCCTTAGTATTGATTAGGTTCTCTGTCCCAGACCTTATTTAAGTAATAAGTTATGTCTACTGTTTTCCATCTTACACCATCAATTAGTCATGTCTATGTAATTTGCTGAACTATggatggctttgtttttgcttgtAGCTTTGTAGTGCCAGATTTCCCTCTTGTTTCCCTCCTATGTTTTAGAATATTGGCTGTGCTGCGTAACCCAATTGTTGTATTATATAAGACACATTTATTTAAATATGGCTGCTTATTgcttttaataaatgtattgtacatAA

Function

GO: NA

KEGG:

id description
K19202 SAP30; histone deacetylase complex subunit SAP30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1242094 lncRNA upstream 49412 58224406 ~ 58224606 (+) True G1092080
TU1241902 lncRNA upstream 51828 58218360 ~ 58222190 (+) True LOC118937686
TU1242091 lncRNA upstream 60435 58213298 ~ 58213583 (+) True G1092077
TU1242089 lncRNA upstream 63715 58209418 ~ 58210303 (+) True G1092075
TU1242088 lncRNA upstream 65184 58208149 ~ 58208834 (+) True G1092074
TU1242116 lncRNA downstream 6100 58292728 ~ 58292951 (+) True G1092102
TU1242118 lncRNA downstream 7544 58294172 ~ 58294640 (+) True G1092104
TU1242119 lncRNA downstream 8558 58295186 ~ 58295397 (+) True G1092105
TU1242121 lncRNA downstream 25546 58312174 ~ 58312500 (+) True G1092107
TU1242125 lncRNA downstream 52511 58339139 ~ 58339358 (+) True G1092111
XM_036937887.1 mRNA upstream 1232 58225787 ~ 58272786 (+) False LOC110537846
XM_036937878.1 mRNA upstream 1232 58225831 ~ 58272786 (+) False LOC110537846
XM_036937883.1 mRNA upstream 1335 58225832 ~ 58272683 (+) False LOC110537846
XM_036937884.1 mRNA upstream 1335 58225833 ~ 58272683 (+) False LOC110537846
XM_036937879.1 mRNA upstream 1335 58225835 ~ 58272683 (+) False LOC110537846
LOC110539153 mRNA downstream 241662 58528290 ~ 58530219 (+) True LOC110539153
LOC110538918 mRNA downstream 258518 58545146 ~ 58546597 (+) True LOC110538918
XM_021624297.2 mRNA downstream 288973 58575601 ~ 58624457 (+) False rab28
XM_036937889.1 mRNA downstream 288981 58575609 ~ 58624457 (+) False rab28
XM_036937892.1 mRNA downstream 404489 58691117 ~ 58824569 (+) False LOC110538919
TU1241903 other upstream 51828 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 359186 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1156091 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1521071 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1548015 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 1254930 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1744375 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 2099036 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2410059 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2529863 60816491 ~ 60818897 (+) True G1095209

Expression Profile