RNA id: TU1242094


Basic Information

Item Value
RNA id TU1242094
length 201
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1092080
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58224406 ~ 58224606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcagtacatctcctcctcatggactgcatcagatttgccagttcttgctacGAGATGTTAACCCCtttttccaccaaggcacctgtcctgtctccctgtagcgctgtattaggcatctcacagtacggacattgcaatgttttgccctggccacatctgcttattaattgtttatggttcttgaacaagcatgggaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1241902 lncRNA upstream 2216 58218360 ~ 58222190 (+) True LOC118937686
TU1242091 lncRNA upstream 10823 58213298 ~ 58213583 (+) True G1092077
TU1242089 lncRNA upstream 14103 58209418 ~ 58210303 (+) True G1092075
TU1242088 lncRNA upstream 15572 58208149 ~ 58208834 (+) True G1092074
TU1242086 lncRNA upstream 18633 58205108 ~ 58205773 (+) True G1092072
TU1242116 lncRNA downstream 68122 58292728 ~ 58292951 (+) True G1092102
TU1242118 lncRNA downstream 69566 58294172 ~ 58294640 (+) True G1092104
TU1242119 lncRNA downstream 70580 58295186 ~ 58295397 (+) True G1092105
TU1242121 lncRNA downstream 87568 58312174 ~ 58312500 (+) True G1092107
TU1242125 lncRNA downstream 114533 58339139 ~ 58339358 (+) True G1092111
XR_005035046.1 mRNA upstream 2191 58216142 ~ 58222215 (+) False LOC118937686
XR_005035047.1 mRNA upstream 2191 58217866 ~ 58222215 (+) False LOC118937686
XR_005035045.1 mRNA upstream 2191 58218020 ~ 58222215 (+) False LOC118937686
XR_005035043.1 mRNA upstream 2191 58218172 ~ 58222215 (+) False LOC118937686
XR_005035044.1 mRNA upstream 2191 58218172 ~ 58222215 (+) False LOC118937686
XM_036937887.1 mRNA downstream 1181 58225787 ~ 58272786 (+) False LOC110537846
XM_036937878.1 mRNA downstream 1225 58225831 ~ 58272786 (+) False LOC110537846
XM_036937883.1 mRNA downstream 1226 58225832 ~ 58272683 (+) False LOC110537846
XM_036937884.1 mRNA downstream 1227 58225833 ~ 58272683 (+) False LOC110537846
XM_036937879.1 mRNA downstream 1229 58225835 ~ 58272683 (+) False LOC110537846
TU1241903 other upstream 2216 58216155 ~ 58222190 (+) False LOC118937686
TU1241907 other upstream 309574 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1106479 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1471459 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1498403 56725607 ~ 56726003 (+) True G1091217
TU1244093 other downstream 1316952 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1806397 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 2161058 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2472081 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2591885 60816491 ~ 60818897 (+) True G1095209

Expression Profile