RNA id: XR_005035044.1


Basic Information

Item Value
RNA id XR_005035044.1
length 1840
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC118937686
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58216142 ~ 58222215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaacatgtatttttactgctgtaattctgttggtaaccagtttgtaATAGCAATACGGCAcatctggggtttgtggtatatggccaatataccacggctagggGCTGTATTCAGGCGTTTCACGTTGCATCGTGCTAAGAACAGCCCTATACCACACCCcatcatgccttattgcttaagtataagTCATACCCATAGAACCTAGCGGTAAAACCCAGAAATGTTTGCAATCGTTTTTTTAACCATTCATTTTTTCGTCTTTATATAAGTTTTTTGTAGCCTTTTGTAGCGAACTAGCTAACCTTAGGTCTCCGTCGATCAGAAGCAAGGATGGTTCTGTGCTATGTACCGGATTGTAACCACTACTCcaaaaagcacacacacattttgttttCCGACCCCGAGAGACGTCGCTGTAGCAGTGTGATAAGGCCAACAGGAGTGCACCCCTCAGACCATCCGGTGCATGGACATCCTGTGCCAGTGGTAGGATATCCTGTGCCAGTGTGATCCGAGCGCAACCGTCCAGTTGTAGACTACAGCAGATCGAGCCTGTGGACGGAGAGTCCAACAGGAGTGTATCCTTCAGACCATCCGGTGCATAGACATCCTGCGCCAGTGTGATCCGAGCATGAGCGTCCAGTTATGGAGGCTACCAttggtgggaaaagtactcaattgtcatacttgagtaaaaATGAGGCGTGACATGCGAAACATCAGTCTCACCCCACGAGAAGCAGTACATGATCAACGCCATCCTCAGCAAGGAGATCTGCTGGAAGTGATGTACTCTCACTCTGGGGAAAACGGGTACTGACAGGAGGAGCAATTACGAGACTGTCAGAGGTCGTCGTGATGGAGGCTTGGTGGTcaaaacaacacagaatcagGTGTTCCTTCGAATGATGTGGCACAGACCTTGGACCTGGTTCCAGTGAGGATGGTCTTCAGAGGCTGTAAGACCCTCCCTCCTTGATATAGAAATCAACTTCAATGGTAATGCCCCTGCACCATAAGGACACTTGACCTCTAACCACTGCAGTGGTGCTCACCAGACCATCCAAGTGAGGCTCCCAGGACCGAAAGCCCTGACTCTCACACATCTATCCCTGTAGCCATTTTGAATGCCTGATGCCCTCCTCTTTATGTGCCCCACTTTACAGGCAACACCCCATCCAATGAGTGTGATCTGAGGACCCTGCTCCACCGACAGCACCATGCCAGCCTGGTTGCCTGCATGCCCCAGGTGCCCTTGTTTTTGAACAATGTCTGGTACAGGGAGAGTTGCAGTTGTTCTAGCTCAGGTTCAAGGAGACATGCCATTCCACTGAACCTTCCCTGGGGACGGTTCCTTACCACGGAAGATCCTCCTCTGTGGGCTCCCGGGACAGAGAGGATTTGTAGTCTTCGGCCAGGTACAGGTCCTCCACTGACTGCACCTGGTTGGGCCCGGCTGGCTTCCTCCTCACACTCCACATCCATACAGCTGATATTGTGATCTGCCAAAATAGGCTGCATGGCTACACTTATGAGCTCCATGGAGGCATTTGCTTGTGATAGAGAGAATTACCTGGTCACTTATTATAGAGACCTGACAAGCGGAAGGATGTTAAGTGCCACATGCCTTTGTGCTTGACTTTGAACACCCTGAAATGCATTTGTTGTAAGAGTGCTAATAAGAAGTTTGACAGAATATTTCAACTGTAATTTTCACAAGGACAAGTGCAGTTTTTCCATAAACTTTTAATTGATAATTTGATTTTCACTTTACATATCAGTCAGTGCAAAGGATCCCATAATCAAGACTGTGAATAAATAAATTGTTTTTGAAGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1242091 lncRNA upstream 4589 58213298 ~ 58213583 (+) True G1092077
TU1242089 lncRNA upstream 7869 58209418 ~ 58210303 (+) True G1092075
TU1242088 lncRNA upstream 9338 58208149 ~ 58208834 (+) True G1092074
TU1242086 lncRNA upstream 12399 58205108 ~ 58205773 (+) True G1092072
TU1242085 lncRNA upstream 13208 58204710 ~ 58204964 (+) True G1092071
TU1242094 lncRNA downstream 2191 58224406 ~ 58224606 (+) True G1092080
TU1242116 lncRNA downstream 70513 58292728 ~ 58292951 (+) True G1092102
TU1242118 lncRNA downstream 71957 58294172 ~ 58294640 (+) True G1092104
TU1242119 lncRNA downstream 72971 58295186 ~ 58295397 (+) True G1092105
TU1242121 lncRNA downstream 89959 58312174 ~ 58312500 (+) True G1092107
XM_021624270.2 mRNA upstream 33723 58159958 ~ 58184449 (+) True LOC110537844
XM_021624269.2 mRNA upstream 116636 58076921 ~ 58101536 (+) False ca4a
XM_021624268.2 mRNA upstream 116636 58076922 ~ 58101536 (+) False ca4a
XM_021624267.2 mRNA upstream 116636 58076924 ~ 58101536 (+) True ca4a
XM_036937877.1 mRNA upstream 146601 58009848 ~ 58071571 (+) False LOC110537841
XM_036937887.1 mRNA downstream 3572 58225787 ~ 58272786 (+) False LOC110537846
XM_036937878.1 mRNA downstream 3616 58225831 ~ 58272786 (+) False LOC110537846
XM_036937883.1 mRNA downstream 3617 58225832 ~ 58272683 (+) False LOC110537846
XM_036937884.1 mRNA downstream 3618 58225833 ~ 58272683 (+) False LOC110537846
XM_036937879.1 mRNA downstream 3620 58225835 ~ 58272683 (+) False LOC110537846
TU1241907 other upstream 303340 57899471 ~ 57914832 (+) True LOC110537841
TU1241421 other upstream 1100245 57115825 ~ 57117927 (+) True LOC110537831
TU1241171 other upstream 1465225 56752418 ~ 56752947 (+) True G1091235
TU1241153 other upstream 1492169 56725607 ~ 56726003 (+) True G1091217
TU1237658 other upstream 3937451 54274306 ~ 54280721 (+) True LOC110538908
TU1244093 other downstream 1319343 59541558 ~ 59542603 (+) True G1093909
TU1244425 other downstream 1808788 60031003 ~ 60034020 (+) True G1094218
TU1245603 other downstream 2163449 60385664 ~ 60385973 (+) True G1095244
TU1245572 other downstream 2474472 60696687 ~ 60714012 (+) True LOC110539079
TU1245566 other downstream 2594276 60816491 ~ 60818897 (+) True G1095209

Expression Profile