RNA id: TCONS_00040918


Basic Information

Item Value
RNA id TCONS_00040918
length 1772
RNA type mRNA
GC content 0.50
exon number 13
gene id XLOC_020745
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3262413 ~ 3299355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCACTTGGTCCGATTTTGTCTCATTTTGTTAATCAGGCCGCGCTCATGGGACGCCGGAGAGAAACCGGATCATCACATCCTCGTTAAACGGTGTCTTTTAGTCGGTGCCTGTTCGGTTCGCAgaggaagaatgttggaaaacaagAGGGAGAGGTTGAAAACGTTTCTGAGGAAGATCGACGAGAGCGCCATATCGCGACTCAAGCATTTAATGAAAGAGAGCTATGCTGTGGACTCGGGCTCCATCCCTGTAAAGGTGAAGAAGAGCAGGTCGAAGAGCAAACTGAGCAGCAGAAAAGCCTTCAGTCTGGAGGAAAACCAGCTGGAGCAGAGCAAGAGCTTGTGCCGGCAGGTCCCGGCCAGgtctcAGACAGTAGATGTGGACAGGCCTTTAGAGAGGAGTGAAAGCCTGAACTCCAGAAGTAGCTTCACCAAACACAACAAAACCTTCCACAAACTCTTCCCAGAAGTCCCGGAGGCAGAAGATCTGCTGCACGcatACATCTGTGCGCTGCAGAAGGAGGTCCCGTATCACGGCCGTCTGTacatcacagacacacacatctgCTTCTTCTCTTCTGTGCTGCTCAAAGACACCAGggtggtCATTCCtgtgtccagtgtgtgtgtggtgaagaAGCAGAACACAGCACTGCTGGTGCCCAATGCCATCTCTGTGCGCACCTCTGATGGggacaagtatTTGTTTGTGTCCCTGCGTAACCGAGAGGGCTGCTATAAGCTGCTGCGCTCCGTCTGTCCTCAGCTGGAGgACTGCAGCGCTAACAGCAGCCCGTTATTCTCCTCAGCGGAAAACAGCTTCGACCACAACAGAGTGGTGAACTCGAGTCAGTCCAGTCTGGAGGATGTGTGTGATTTGTCGTCTCCTCCGGAGGATCAGATCTCTGCGTCACCGCGACTGTCGAGAGagaGTGCAGCGAAAGCCTCAGTCAGTTCACCCACTGAAGACGACAGCGCGGATGATGAGCACACCGGAAGCTGGTGGGTGTGGAGCGTGACGGAGCGAGCGCGATCGCTGCTCATCCAGAGAGAAATGAACAAGCTGAACACACTCCTGCTCGTCTACCTGATCCTGGTGTTTCTGCTGCTGTTGTCGTCTGGATACATCGGTCTGCGTATCGTGGCTTTAGAGGAGCAGCTGTCGTCTCTCGGAGCTTTACCTGACCTCACTTTACATAGCAGCAGATATAAAGAAACATAGGAAGAGTCCTGGATGTGAACCGTGGAAAAGCACCGAAACGCCTGCCGGAGCTGCTGGGACGTCGTCATTTGCACATCACTTTCTGCCAAGAGATGCGAACATGTGTGTTCACTTGCTCCGCGAAAACAACCAAAGACAGACGGAGAGACGAACGAAAGCATTTCAGCGCCTTCATTTCACCAGTCGAACATTTCACCGACATGTCGACCGTGACCTCACTTCCTTTATTTTTTGATCGATTGCCTGCTTTATCTTCTTCTGCAACCACAGCGTCTTTCATTCTAATGTGTTTCGTTTATCTTCAAAGGGGTTGCCATATTAAACCAAGTTCGGGTTTAACGAATTAAAAAATTGAGAGAGCGCTAAGCTAGCTATCCGACCCTTAGTATTACTGTATGTATCGTCTATgcacaaaagaagaaagaaaaaaaagaatcagGTATTTAACACACGTTTTGTAACGTCGTTCGTGTTTTTATACTTAACGGAGAAGAGTTCGCCGAATACGACGGTTTCTTCgttatttctaaatgtaaaaaaaaaaaga

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5694 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000160305

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040911 lncRNA downstream 111282 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 370882 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042295 lncRNA downstream 435342 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042293 lncRNA downstream 437727 2795028 ~ 2825701 (-) True XLOC_020734
TCONS_00042297 lncRNA upstream 48413 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00042298 lncRNA upstream 441486 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042299 lncRNA upstream 584507 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042300 lncRNA upstream 1433907 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 1446007 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00040914 mRNA downstream 1549 3252936 ~ 3261879 (-) False XLOC_020744
TCONS_00040915 mRNA downstream 8087 3254260 ~ 3255341 (-) True XLOC_020744
TCONS_00040912 mRNA downstream 80463 3160447 ~ 3182965 (-) False XLOC_020743
TCONS_00040913 mRNA downstream 90605 3164642 ~ 3172823 (-) True XLOC_020743
TCONS_00040910 mRNA downstream 111071 3121086 ~ 3152357 (-) False XLOC_020742
TCONS_00040920 mRNA upstream 37623 3336723 ~ 3344613 (-) True XLOC_020746
TCONS_00040921 mRNA upstream 90247 3389347 ~ 3564563 (-) False XLOC_020748
TCONS_00040922 mRNA upstream 90810 3389910 ~ 3595439 (-) False XLOC_020748
TCONS_00040923 mRNA upstream 148824 3447924 ~ 3449282 (-) False XLOC_020748
TCONS_00040925 mRNA upstream 611510 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040899 other downstream 2033406 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 2103679 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 2446021 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 2916014 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040924 other upstream 296168 3595268 ~ 3680725 (-) True XLOC_020748
TCONS_00040930 other upstream 1012703 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 1520310 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 1528856 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 1599486 4898586 ~ 4899116 (-) True XLOC_020764

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU187013 True 1638 lncRNA 0.47 3 CI01000031 480924 ~ 491513 (+)