RNA id: TCONS_00040922


Basic Information

Item Value
RNA id TCONS_00040922
length 5842
RNA type mRNA
GC content 0.56
exon number 32
gene id XLOC_020748
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3389347 ~ 3680725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCCAAACGTCCAGCGTGCCGACCCCTCGTCTCCAGCCTGCGGGGCCGCCGGCTCTCCAGCCAGGTCAAAGGTCATCTGCGTCATGATGCCAACCGGTCACCTGCCCATCCTGCTCTCCCTGAGCGCCCTGCTGCTGTCTCCGCTGCTCACCGGCTCCTTAGCCTTATCTTCACCCAGGTTTACAAAAGTACCTGTAGACATGATCGGCGTCTCCGGAGGTGTTGTATCCTTCGTTTGCCAAGCCACAGGTGACCCCAAACCCAAAGTAACCTGGAACAAGAAAGGGAAAAGGGTGAACTCGCAACGCATCGAGACGATAGAGTTTGATGAAGGTGCAGGAGCCGTCCTGAGGATCCAGCCTCTCCGGGCGCCTCGAGACGAGAACGTCTACGAGTGTCAGGCGGAGAACAGCGAAGGCGAAATCAATGTCCAAGCCAAGCTGTCCATCATCAGAGAGGACCTACTTCCTCCTGGCTTCCCTAACATTGACATGGGCCCACAACTGAAGGTGGTGGAGCGAACGCGTACTGCTACCATGCTCTGCGCCGCCAGTGGAAACCCTGACCCAGAAATCACCTGGTTCAAAGACTTCCTTCCCATCGACCCCAACACAAGTAACGGCCGAATAAAACAACTCCGATCAGGTGCCCTGCAGATAGAAAACACTGAGGAAACCGACCAGGGGAAGTACGAGTGTGTGGCGTCAAATGTGGAAGGCGTCCGATACTCTTCCCCTGCCAACTTGTATGTGCGAGTTCGTCGCGTGCCCCCACGTTTCTCCATCCTGCCCACCAGCCAAGAGATCATGCCGGGCGGGAGCGTCAACATCACTTGTGTCGCCGTGGGCTCGCCGATGCCCTACGTCAAGTGGATGCTTAACTCGGAGGACTTGACGCCTGAGGATGAGATGCCAGTGGGCAGGAACGTTCTGGAGTTGAACAGCGTCCGCGAGTCAGCCAACTACACCTGCGTGGCCATGAGCAGCCTGGGCATCATTGAGACTGTGGCCCAGATCACTGTCAAGTCCTTGCCAAAACCTCCGGGCACCCCTGTCGTAACTGAAACCACTGCCACCAGTATCACCATCACCTGGGACAGTGGGAATCCTGAGCCTGTCTCTCATTACATCATCCAGTATCGCGCCAAGTCTCCCGAGAGCAAGTTTGAGACTGTGGACTCCATCACCACCACTCGCTACAGCATTGGAGGACTTTCTCCCAACACGGATTATGAGATCCGCGTTTCAGCCTTCAACACCATTGGGCAAGGCCCACCCAGCGAACCGGTGGAGGCTCGGACTGGAGAGCAAGCTCCCGCCAGCCCGCCAAGAAACATCCAAGCCCGAATCATCTCGCAGAACACTGTGTTGGTACGCTGGGATGAGCCGGATGAGCCCAATGGACAGATCAAAGGTTATCGGGTCTACTACACCATGGACCCAACTCTCCCCATGAGCATGTGGCAGATCCACAATGTCCAGGACAGCGTGCTCACCACCATTCAGAGTCTGGTGACCTCTGAGACCTACACCATCAGAGTTCTGGCTTTCACATCTGTTGGAGATGGACCTTTCTCAGATCCCATTCACGTCAAAGTGCTTCAAGGAGTCCCAGGACAGCCGACCAATTTCCAGGTCGGAGAGGTGTCAGACACGGGTGTTGAGCTGACGTGGGAACCAGCCTTTGAGAAAGAGGGAATCATCAGTTACGAACTGCATTACAAAGAGGGCAAAGATGGACCTCTGGGTAAGAAAAAATTTGCTCCGACCTCTTCCTTTGTGGTGGACGGCCTACGTCCGAATACGGAGTACTTCTTTTCTCTGGCTGCCGTCTCCAGCAAGGGCATTGGAGCCTTCACCAACGACTTAGCCCAGACGACGTCTCAAGCCAAGCCCTCCGCCCCCCCTCAAGACATTAAGtgctccagctccagctccaccGTCCTGATGGTAAGTTGGCGCCCTCCGCCGGCAGAAAGCCAAAATGGGGAGCTGGCCGGGTACATTGTGCGCTACGCGGTGGTGGGCGCCGGAGCCGAGGTCAGCACGGAGCATGTGGAGGCGCCCACGTCCGACCAGATCCTGTTGCAACGGCTGGAGAAATGGACTATGTACCGGGTCACCGTGGCGGCCTCCACCAGTGTGGGTTCGGGCCCTGAGAGCGAGCCTCTGCTCTGCCGGACTGATGAGGACGTCCCCGGGGCCCCGCCGCGCCGCGTGGAGGTCGAAGTGCTCAACTCCACTGCCATCAAGGTGATGTGGCGCTCCTTACTGCCAGGAAAGCAGCACGGGCAGATCCGGGGGTACCAAGTGCACTACGTCCGAGTGGAGAACGGTGAATCCCGTGGCCTCCCGCTCATCAAGGACGTCATGCTAGCTGATGCACAGGAGATGGTCATCGGGGGCCTGCAGCCCGACACCACGTACTCCATCACGGTGGCAGCCTACACCACCAAAGGAGACGGAGCCCGCAGCAAGCCCAAGCTGGTGCTCACCAAAGGAGCAGTACCAGGGCCTCCTTTTCTCTCCGTCAACCAGAACTCAGAGTCTACTGCAATAATCCGCTGGCAACCCCCAGATTACGTTGCTCCTGGCCTCGAGGTGCAGGGGTACCGGCTACAGTTTGGCCGAAAAGATGTGAACCCCCTGGCTACGCTGGAGTTTGGCCCGCAGGAGCTGGAATATTCCATTAGCAATATCCACCGAGGGGCTACGTACATCTTCAAAGTGTCCGCCAAGTCCAAGTCAGGATTTGGTGAAGAGGCAACTCAAGAACTAAGAGTCCCGGAAGAGGTTCCTCGAGGGTATCCTCAAATAACCGAAGGGTCCAACATCACCTGCTGCTCAGTCCAGTTCTCCTGGCTCCCTCCGGTGCTGGCGGAGCGCAATGGCGCTATAACAGAATACACCCTATCATATCAGGAGGCCGGAACAATCAGTGGACCTAAGGAATTGCGCCTGCCGGCCGATGAGAACAGTTACATCCTAAACAGCCTGAGGCCCAACGCAGTATACGATGTGAAAATTCGAGCGCACACCAGCGTAGGTCCAGGGCCCTACAGCCCACCGATCCAGTATCGAACAGTGGCCTATGAAGCAGATGTTCCTAGGAACTTCACTGTAAAGCTGGTCACCAAGACAACAGTTCTGCTTTCCTGGAAGTTCTATGATAGCCGTTTCCCATATAAATGCACGATCGAGTACCACCGGCAGAAGTCTGACATTGACGCGAGGATGACGAAAACTCTCATCACAAACTTGCGACCCAACACAACCTATGAGTTCAGAATCAGCTGCCAGGACAGTAGCGATGGTGGACCCAAACACAAGCTTGTTGCCCGAACTGCGCCACATATTCAGATCCGAAAGCCTGAGTTAGACCTGAAAAGAGAGTCAGAGAGTACACTGACCATTGTCTTCCCACCGCTGGAAACAAAAGACTTGATCAAAGCAATCTATGTCGTGGTGGTTCCTCTAAAGAAGGGAAAAGGACCGATGCGCCACATCAAGAGCCCAGATGAGCTGGACCTGGAAGAGCTGTTGGGTGAACGAAGGCTCGGTCTACATCACTCCGGAACCACCCGTCAGCTCAAACAGGTGGACGGGAAACGGCCCTACATCGCTGCCAGCTTCAAGCCCTCATCCATGCCACCGTCCTTCACTTTGGGCAACCAGATGATGTACGGCAGCTTCGAGAATCGTGCTTTGGACCGCGGGCAGGAATATGTGCTGTTCATTCTGGCCGAGCTCAACACCACCGGCGTGAAAGCGTTTGTATCCAGCCCCTACACAGACCCAATCATGGCCCCCGATTTGGACCCTCAGCCGTTGGAGTCAGGAGGAGATGGCCTCATCTGGGTGGTTGGACCTGTCCTCGCTGTGGTCTTCATAATCTGTATCGTGATTGCCATTCTCCTCTATAAGAACAGCAAACGTAAAGAGTCGGAGCCGCGGACCAAATGCCTGCTGAACAACGCCGATATCACGCCTCACCATCCCACAGATCCCGTCGAGATGAGGAGAATCAACTTCCAGACGCCagATTCGGGTCTGAGCAGTCCTGTCAGCGAAGCCGGTTTTGACTATGAAAGTATGATGAACCACCCGCCCATACCCATCTCAGAACTAGCCGAGCACACAGAGCTACTGAAGGCCAACGACAACCTGAAGCTCTCCCAGGAGTACGAGTCCATCGATCCGGGTCAGCAGTTCACCTGGGAGCATTCCAACCTGGAGGTCAACAAACCCAAGAACCGCTACGCCAACGTCATCGCCTACGACCACTCCCGCGTAATCCTGGCACCCATCGAAGGAATCACAGGTAGCGACTATATCAATTCCAACTACATCGACGGCTACAGGAAGCAGAACGCATATATAGCCACGCAGGGACCACTGCCGGAAACCTTCGGAGACTTCTGGAGGATGGTGTGGGAGCAGCGAGCTGCAACGGTGGTCATGATGACCAGGCTGGAGGAAAAGTCACGGATAAAGTGTGACCAGTACTGGCCAAGTAGAGGGACGGAGACCTACGGGATGATCCAAGTCACTCTTCTGGACACTATCGAACTCGCCACCTTCTGTGTGCGCACATTCTCCTTGCACAAGAATGGTTCCAGTGAAAAGCGAGAGGTTCGACAGTTCCAGTTTACCGCCTGGCCGGACCACGGCGTTCCCGAGTACCCTACTCCATTCCTGGCCTTCCTCAGGAGGGTGAAGACGTGCAATCCACCGGATGCCGGACCCATCATCGCCCACTGCAGTGCTGGTGTGGGCCGCACAGGCTGCTTCATCGTTATCGATGCCATGCTAGAACGCATCAAGCACGAGAAGACAGTGGACATCTATGGTCATGTTACCCTCATGCGCTCCCAGAGGAACTACATGGTGCAGACGGAGGACCAGTACAGCTTTATCCACGATGCCCTCCTGGAGGCTGTAGCCTGCGGGAACACCGAGGTGGCGGCACGAAGCCTCTTCTCCTACATCCAGAAGCTGGCACAGGTGGAGGCAGGAGAGCATGTCAGCGGCATGGAGCTGGAGTTCAAGCGATTGGCGAACTCCAAAGCTCACACGTCCAGATTCATAAGTGCCAATCTGCCCTGCAACAAATTCAAGAACCGCCTGGTTAACATCATGCCGTACGAGACCACTCGAGTGTGCCTGCAGCCAATCAGAGGGCTGGAGGGCTCCGACTACATCAACTCCAGCTTTATTGACGGATACAGACAACAGAAGGCGTATATAGCCACGCAGGGGCCGTTAGCGGAGACCACCGAGGACTTCTGGAGGATGTTGTGGGAGAACAACTCCACCATTGTGGTGATGCTGACCAAACTGCGGGAGATGGGCAGAGAGAAGTGTCACCAGTATTGGCCGGCAGAGCGCTCGGCTAGATATCAGTACTTTGTGGTGGATCCAATGGCGGAGTACAACATGCCGCAGTACATCCTCCGAGAGTTTAAAGTGACAGATGCCCGGGACGGTCAGTCCAGGACCGTCCGTCAGTTCCAGTTCACCGACTGGCCGGAGCAGGGTGTTCCCAAATCTGGAGAGGGATTCATCGACTTCATCGGACAGGTGCATAAAACAAAGGAGCAGTTCGGACAGGACGGTCCCATCTCTGTCCACTGCAGTGCCGGTGTTGGACGGACCGGGGTCTTCATTACGCTGAGTATCGTGCTGGAAAGGATGCGTTATGAGGGAGTCGTGGACATTTTCCAGACGGTCAAAATGCTCAGAACACAGCGGCCAGCAATGGTGCAGACGGAGGACGAGTACCAGTTTTGCTACCAGGCGGCTCTGGAGTACCTTGGAAGTTTTGATCACTATGCAACGTAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0016311 dephosphorylation biological_process
GO:0021772 olfactory bulb development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020107-3 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within olfactory bulb development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and nervous system. Orthologous to human PTPRS (protein tyrosine phosphatase receptor type S).

Ensembl:

ensembl_id ENSDART00000083308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042297 lncRNA downstream 42026 3347513 ~ 3347884 (-) True XLOC_020747
TCONS_00040911 lncRNA downstream 237764 3147100 ~ 3152146 (-) True XLOC_020742
TCONS_00042296 lncRNA downstream 497364 2889663 ~ 2892546 (-) True XLOC_020738
TCONS_00042295 lncRNA downstream 561824 2814463 ~ 2828086 (-) True XLOC_020736
TCONS_00042294 lncRNA downstream 582883 2799465 ~ 2807027 (-) True XLOC_020735
TCONS_00042298 lncRNA upstream 145147 3740586 ~ 3741284 (-) True XLOC_020749
TCONS_00042299 lncRNA upstream 288168 3883607 ~ 3886684 (-) True XLOC_020750
TCONS_00042300 lncRNA upstream 1137568 4733007 ~ 4735337 (-) True XLOC_020756
TCONS_00042301 lncRNA upstream 1149668 4745107 ~ 4746442 (-) True XLOC_020758
TCONS_00042302 lncRNA upstream 1186868 4782307 ~ 4783024 (-) False XLOC_020761
TCONS_00040920 mRNA downstream 45297 3336723 ~ 3344613 (-) True XLOC_020746
TCONS_00040916 mRNA downstream 90555 3262413 ~ 3299355 (-) False XLOC_020745
TCONS_00040925 mRNA upstream 315171 3910610 ~ 3914222 (-) False XLOC_020751
TCONS_00040928 mRNA upstream 315292 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040927 mRNA upstream 315292 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040926 mRNA upstream 315292 3910731 ~ 3914162 (-) False XLOC_020751
TCONS_00040929 mRNA upstream 315292 3910731 ~ 3914222 (-) True XLOC_020751
TCONS_00040899 other downstream 2159888 1229906 ~ 1230022 (-) True XLOC_020689
TCONS_00040895 other downstream 2230161 1158069 ~ 1159749 (-) False XLOC_020686
TCONS_00040885 other downstream 2572503 812920 ~ 817407 (-) True XLOC_020678
TCONS_00040857 other downstream 3042496 344918 ~ 347414 (-) False XLOC_020658
TCONS_00040930 other upstream 716364 4311803 ~ 4313118 (-) True XLOC_020752
TCONS_00040947 other upstream 1223971 4819410 ~ 4899294 (-) False XLOC_020764
TCONS_00040949 other upstream 1232517 4827956 ~ 4899294 (-) False XLOC_020764
TCONS_00040955 other upstream 1303147 4898586 ~ 4899116 (-) True XLOC_020764
TCONS_00040987 other upstream 2114564 5710003 ~ 5713793 (-) False XLOC_020792

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006195 True 1743 mRNA 0.53 11 CM030142.1 19824825 ~ 19859369 (-)