RNA id: TU1245876


Basic Information

Item Value
RNA id TU1245876
length 311
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1095485
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60938691 ~ 60939001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctacatgtgttgtgaatccagccaaaaTGTCAGAttttcggcaaaagcaaacgatgctattatctgagcatagcaccatagtaaacaaaagagagaacatttcaaccctgcaggcgcgacacaaactgcagaaataaaaatataaatcatgccttacctttgacgagcttcttctgttggcactccaatatgtcccataaacatcacaaatggtccttttgttcgattaattccgtccatatatatccacaATGTCCACAAtgttatttggcgcgtttgatccagaaaaacacaggttccaacttgcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245861 lncRNA upstream 20580 60917873 ~ 60918111 (+) True G1095470
TU1245860 lncRNA upstream 21657 60916832 ~ 60917034 (+) True G1095469
TU1245857 lncRNA upstream 22494 60915888 ~ 60916197 (+) True G1095466
TU1245853 lncRNA upstream 26587 60911891 ~ 60912104 (+) True G1095462
TU1245851 lncRNA upstream 27032 60906608 ~ 60911659 (+) True G1095460
TU1245877 lncRNA downstream 1292 60940293 ~ 60940578 (+) True G1095486
TU1245879 lncRNA downstream 3719 60942720 ~ 60942993 (+) True G1095488
TU1245880 lncRNA downstream 4713 60943714 ~ 60943928 (+) True G1095489
TU1245883 lncRNA downstream 10332 60949333 ~ 60949550 (+) True G1095492
TU1245885 lncRNA downstream 11107 60950108 ~ 60950677 (+) True G1095493
XM_036937959.1 mRNA upstream 45267 60886071 ~ 60893424 (+) True bcl2l12
XR_005035059.1 mRNA upstream 94543 60842691 ~ 60844148 (+) False LOC118937692
XR_005035060.1 mRNA upstream 94543 60842691 ~ 60844148 (+) True LOC118937692
XM_036937967.1 mRNA upstream 106591 60827461 ~ 60832100 (+) False LOC110538924
XM_021626074.2 mRNA downstream 98723 61037724 ~ 61041909 (+) True LOC110539100
XR_005035062.1 mRNA downstream 140567 61079568 ~ 61079848 (+) True LOC118937694
XR_005035061.1 mRNA downstream 156790 61095791 ~ 61097619 (+) False LOC118937693
XM_021626079.2 mRNA downstream 177697 61116698 ~ 61126203 (+) True LOC110539103
XR_005035063.1 mRNA downstream 224832 61163833 ~ 61164098 (+) True LOC118937695
TU1245566 other upstream 119794 60816491 ~ 60818897 (+) True G1095209
TU1245572 other upstream 224679 60696687 ~ 60714012 (+) True LOC110539079
TU1245603 other upstream 552718 60385664 ~ 60385973 (+) True G1095244
TU1244425 other upstream 904671 60031003 ~ 60034020 (+) True G1094218
TU1244093 other upstream 1396088 59541558 ~ 59542603 (+) True G1093909
TU1245870 other downstream 15699 60954700 ~ 60965595 (+) True mmp25a
TU1245937 other downstream 98738 61037739 ~ 61352345 (+) True G1095540
TU1246640 other downstream 1507503 62446504 ~ 62447474 (+) True LOC118937701
TU1247110 other downstream 2363490 63302491 ~ 63334694 (+) True LOC100305204
TU1247501 other downstream 2949095 63888096 ~ 63890557 (+) False LOC110538933

Expression Profile