RNA id: TCONS_00041687


Basic Information

Item Value
RNA id TCONS_00041687
length 1432
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_021255
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 29584800 ~ 29586608 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcGGTCTTCACACGCTCCATCGACGAGATGCGAGAGATTAACCATGCAGTTTTTCTCATGCTGAGCGACTTTAAACAGAGAAGTTGCACTCCGAGGGACGTTTCTTAGATGCCTTAATAAGTTTGTGGAAAGCTTCAGGCTTATTTCATTAAGATGTCAGAATGATTAGAATCGTCTCTGTTTGTCAGtaatatggaaaaagtgaagtgtcaTCAACCAAAAACATAATTTCACTCGTGTGGAGAAGAGACTGTAACTGTCAGCTATGATTTGTGGGGCCAATGCAACCAATGGGACCAATGCAACAAAGGAGTACACCCTGCTGGTGGCCCTACCACTGAGCGTTGCAGTGGGGctcctcatcctcctcatcaTCTTCGGCAATGTCCTGGTGATCATCGCCGTGTTCACGAGCCGAGCACTCCGGGCTCCCCAGAACCTCTTTCTGGTCTCGCTGGCCTCAGCTGACATACTGGTGGCCACTCTGGTGATGCCGTTCTCATTGGCGAATGAGCTGATGGGTATGTGGACGTTTGGGGGAGTTTGGTGTGAAATCTACCTGGCCTTGGACGTTCTTTTCTGCACAGCTTCAATTACTCACCTGTGCGCCATCAGTCTGGACAGGTACTGGTCAATTACGCAAGCCATCGAGTACAACCTGAAGCGAACACCGCAACGTATTAAGCGTATCATTTTTATCGTTTGGATCATCGCCGCCGTGATCTCCTGCCCCCCTCTTATAACAATGAAGAAATCTGAGGGGGATATCTGTGACATCAATAAGGAAAAATGGTACATAGTCTCATCTTGCATTGGCTCGTTTTTCCTGCCTTGCATCATCATGGTCCTCGTCTACATCCGGATCTATCAAATTGCCAAGAAGAGAACTAGAGCACCTCCTGGGGACCACAGGAAAAACGAAGTGGGAAAGAAGGAAAACGACCCGCATGAGAAGCTCAATGGAATTCAGAATGCAGAACCGGACGACAAGGATGAAATAAATGGTGTGGACATGGAGGAATCCTCCTCCTCAGACCACAAGGTCTCCAATCCTTGCTCCCTCAAGAAGAAAAGCTCAAAAGGAAAGACCAAGTTGAGCCAAATCAAACCAGGCGATGGAGACAAAACCGAGGCCTGCCAGACTACCAAAGCAAGCAGATGGAAGGGCCGTCAAAACCGAGAGAAGCGGTTCACATTTGTTCTGGCGGTGGTCATAGGCGTGTTCGTCATTTGTTGGTTCCCGTTCTTCTTCACCTACACATTCACAGCGTTTTGTGACTGCTGTGTGCCTGAAACACTTTTTAAGTTCTTCTTCTGGTTCGGCTACTGCAACAGCTCCCTCAATCCCATTATATACACTATCTTCAATAACGACTTCCGAAGATCCTTTAAAAAGATCCTCTGCCGGAGAGATAAGAGGAGAGTGGTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0071880 adenylate cyclase-activating adrenergic receptor signaling pathway biological_process
GO:0071881 adenylate cyclase-inhibiting adrenergic receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004935 adrenergic receptor activity molecular_function
GO:0004938 alpha2-adrenergic receptor activity molecular_function
GO:0051379 epinephrine binding molecular_function

KEGG:

id description
ko04022 cGMP-PKG signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-021010-1 Enables alpha2-adrenergic receptor activity. Involved in adenylate cyclase-inhibiting adrenergic receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gut; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder and type 2 diabetes mellitus. Orthologous to human ADRA2A (adrenoceptor alpha 2A).

Ensembl:

ensembl_id ENSDART00000059869

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041979 lncRNA downstream 660530 28914209 ~ 28924270 (-) False XLOC_021251
TCONS_00042430 lncRNA downstream 661231 28920427 ~ 28923569 (-) False XLOC_021251
TCONS_00042429 lncRNA downstream 661231 28920427 ~ 28923569 (-) True XLOC_021251
TCONS_00041978 lncRNA downstream 661863 28912994 ~ 28922937 (-) False XLOC_021251
TCONS_00041977 lncRNA downstream 663679 28911878 ~ 28921121 (-) False XLOC_021251
TCONS_00041693 lncRNA upstream 105292 29691900 ~ 29836026 (-) False XLOC_021258
TCONS_00042431 lncRNA upstream 665729 30252337 ~ 30272442 (-) False XLOC_021261
TCONS_00042432 lncRNA upstream 682397 30269005 ~ 30272700 (-) False XLOC_021261
TCONS_00042433 lncRNA upstream 683005 30269613 ~ 30272544 (-) True XLOC_021261
TCONS_00042434 lncRNA upstream 795691 30382299 ~ 30383228 (-) True XLOC_021262
TCONS_00041684 mRNA downstream 248491 29312228 ~ 29336309 (-) False XLOC_021254
TCONS_00041685 mRNA downstream 248491 29312911 ~ 29336309 (-) False XLOC_021254
TCONS_00041686 mRNA downstream 248532 29316268 ~ 29336268 (-) True XLOC_021254
TCONS_00041682 mRNA downstream 342453 29168702 ~ 29242347 (-) False XLOC_021253
TCONS_00041680 mRNA downstream 379473 29165330 ~ 29205327 (-) False XLOC_021253
TCONS_00041688 mRNA upstream 10038 29596646 ~ 29640181 (-) True XLOC_021256
TCONS_00041689 mRNA upstream 69373 29655981 ~ 29689485 (-) False XLOC_021257
TCONS_00041690 mRNA upstream 72375 29658983 ~ 29689981 (-) True XLOC_021257
TCONS_00041695 mRNA upstream 271927 29858535 ~ 29906764 (-) True XLOC_021259
TCONS_00041696 mRNA upstream 324718 29911326 ~ 29922872 (-) True XLOC_021260
TCONS_00041675 other downstream 804467 28780257 ~ 28780333 (-) True XLOC_021248
TCONS_00041674 other downstream 804763 28779949 ~ 28780037 (-) True XLOC_021247
TCONS_00041673 other downstream 804988 28779715 ~ 28779812 (-) True XLOC_021246
TCONS_00041652 other downstream 2052438 27530635 ~ 27532362 (-) False XLOC_021233
TCONS_00041691 other upstream 105644 29692252 ~ 29760118 (-) False XLOC_021258
TCONS_00041692 other upstream 105644 29692252 ~ 29822751 (-) False XLOC_021258
TCONS_00041694 other upstream 157392 29744000 ~ 29759718 (-) True XLOC_021258
TCONS_00041697 other upstream 797391 30383999 ~ 30384127 (-) True XLOC_021263
TCONS_00041699 other upstream 893810 30480418 ~ 30482315 (-) True XLOC_021266

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000015_06473902_06477166.mRNA True 2461 mRNA 0.45 3 CI01000015 6472932 ~ 6477232 (+)