RNA id: TCONS_00045063


Basic Information

Item Value
RNA id TCONS_00045063
length 2393
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_022518
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35200692 ~ 35203084 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAGTGTGTTTTTAACAATTTTCATAAGAAATAACACACTTAGTTTACTTAGTATAATATACAcgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTGTCCGGatctgtttctccgcctaacggcgacgtgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACTCCTGACCTGTGCTCGCCTCACGCCCGACATGTTGCTCCACCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaataccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactattgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGACTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgCAGCATACATTGACCTTGCCAGTGTGGACTTTTTTTCTGCAactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaataataaatttttagttgactaatggttattcaattattagggggcagccctagtaatcattagccacttcaacactttaaactgagagattgaactctaatgccaatttgtttttgtctggttattttttaaaatctgctgtTCATGCAACCAGTGACATTCTCTTGTTTGATTTTTAGCACAGGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatgaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044744 lncRNA downstream 432541 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00044397 lncRNA downstream 1436417 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044394 lncRNA downstream 1450372 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00044385 lncRNA downstream 1461581 33731189 ~ 33739111 (-) False XLOC_022509
TCONS_00045062 lncRNA downstream 1461747 33731189 ~ 33738945 (-) False XLOC_022509
TCONS_00044416 lncRNA upstream 190023 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045064 lncRNA upstream 337276 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00045065 lncRNA upstream 460768 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045066 lncRNA upstream 460768 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00044436 lncRNA upstream 817712 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044408 mRNA downstream 4784 35187683 ~ 35195908 (-) True XLOC_022517
TCONS_00044405 mRNA downstream 118198 35027753 ~ 35082494 (-) False XLOC_022516
TCONS_00044403 mRNA downstream 130887 35027177 ~ 35069805 (-) False XLOC_022516
TCONS_00044404 mRNA downstream 133744 35027753 ~ 35066948 (-) False XLOC_022516
TCONS_00044407 mRNA downstream 133876 35051159 ~ 35066816 (-) True XLOC_022516
TCONS_00044410 mRNA upstream 41294 35244378 ~ 35347738 (-) False XLOC_022519
TCONS_00044411 mRNA upstream 56794 35259878 ~ 35347714 (-) True XLOC_022519
TCONS_00044413 mRNA upstream 158640 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044412 mRNA upstream 158640 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044414 mRNA upstream 159691 35362775 ~ 35396871 (-) False XLOC_022520
TCONS_00044402 other downstream 1214327 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1231704 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 1455921 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 1899273 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 1981564 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044409 other upstream 41294 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 661642 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 795463 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 1118926 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 1210614 36413698 ~ 36418022 (-) False XLOC_022539

Expression Profile

//