RNA id: XM_021567354.2



Basic Information


Item Value
RNA id XM_021567354.2
length 721
RNA type mRNA
GC content 0.52
exon number 3
gene id crygmxl2
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17149378 ~ 17151329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAATGGTCCCTGACGTCTAAAAAGGTCACTTCTAGTCACTACAATGTAGACACAGGTCTATTTTACTGTCAGTAGAAGAGTATAAAAAAGGGCCTGAGAGTCTGCTGAGGGCTACGGTGCAGACATCAAGCCCTCCAACCATGGGAAAGATAATCTTTTACGAAGGCCACAACTTCCAGGGTCGACACTATGAGTGCAACAGTGACTGTGCTGACACGTTCAGACACTTCAACTGCTGTAACTCTATCAGGGTGACCGGCGGTCACTGGGTGGCCTACGAGAAGCCCAACTTCAACGGCTACCAGTACATCCTGAACCAGGGAGAGTACCCTGACCACCACCACTGGATGGGCTTCAACAACTGCATCCGTTCCTGCCAGATGTTCCCCCCCTACAGAGGAGCCTACAGAATGAGAATCTACAACAGGCCTGagatgtctggtcacatgatgGAGTTCATGGACGACTGCCCCAACGTGTATGAGCGTTTCCGCCACCGTGACATCTTCTCCTCCAATGTCATGGAAGGCTACTGGGTGTTCTACGAGCACCCCAACTACAGGGGTCGTCAGTACTTCCTCCGCCCCGGGGAGTACAGGGCCTGCAACGACTGGGCCTGCCACAACCCCATGGTGGGCTCCTTCAGGAGAATGAGGAGTGGCCTGTAAGCTTCTCACATCTGGACTGTAACAAAGTGATTAAAGGTGCTGGTTTTTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1539627 lncRNA upstream 51370 17065748 ~ 17098008 (+) True G1346743
TU1539621 lncRNA upstream 82385 17065748 ~ 17066993 (+) False G1346743
TU1539623 lncRNA upstream 82493 17065690 ~ 17066885 (+) False G1346743
TU1539620 lncRNA upstream 82493 17065748 ~ 17066885 (+) False G1346743
TU1539625 lncRNA upstream 82493 17065748 ~ 17066885 (+) False G1346743
TU1540265 lncRNA downstream 6996 17158325 ~ 17159636 (+) True G1347308
TU1540267 lncRNA downstream 9112 17160441 ~ 17160739 (+) True G1347310
TU1540268 lncRNA downstream 9869 17161198 ~ 17161438 (+) True G1347311
TU1540269 lncRNA downstream 10225 17161554 ~ 17161900 (+) True G1347312
TU1540271 lncRNA downstream 11182 17162511 ~ 17212117 (+) True LOC110491469
XM_036946323.1 mRNA upstream 83860 16953437 ~ 17065518 (+) False LOC110491462
XM_036946324.1 mRNA upstream 83860 16953437 ~ 17065518 (+) False LOC110491462
XM_036946329.1 mRNA upstream 83860 16953437 ~ 17065518 (+) False LOC110491462
XM_036946317.1 mRNA upstream 83860 16953438 ~ 17065518 (+) False LOC110491462
XM_036946319.1 mRNA upstream 83860 16953438 ~ 17065518 (+) False LOC110491462
XM_021564934.2 mRNA downstream 808 17152137 ~ 17156699 (+) False LOC110491464
XM_021564933.2 mRNA downstream 983 17152312 ~ 17156699 (+) False LOC110491464
XM_036945875.1 mRNA downstream 35560 17186889 ~ 17197923 (+) True LOC110491467
XM_021564938.2 mRNA downstream 48528 17199857 ~ 17206714 (+) False LOC110491468
XM_036946350.1 mRNA downstream 48528 17199857 ~ 17206714 (+) False LOC110491468
TU1539652 other upstream 203134 16945928 ~ 16946244 (+) True G1346758
TU1538191 other upstream 1605841 15542391 ~ 15543537 (+) True G1345431
TU1538174 other upstream 1624810 15524002 ~ 15524568 (+) True G1345417
TU1537885 other upstream 1665865 15483147 ~ 15483513 (+) True G1345170
TU1537796 other upstream 1781922 15280053 ~ 15367456 (+) True G1345084
TU1539740 other downstream 4125 17155454 ~ 17156670 (+) True LOC110491464
TU1540371 other downstream 84954 17236283 ~ 17273980 (+) False LOC110492842
TU1540858 other downstream 445390 17596719 ~ 17603471 (+) True LOC110491483
TU1542039 other downstream 1403848 18555177 ~ 18555452 (+) True G1348897
TU1542100 other downstream 1601294 18752623 ~ 18760420 (+) False LOC110491516

Expression Profile