RNA id: XM_021564933.2



Basic Information


Item Value
RNA id XM_021564933.2
length 1083
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110491464
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17152137 ~ 17156699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGATAAACCGTGATACATCTTTCGTATTTGGATTCACTGGATAGTATTATAAATAACGAAATAGCTTGCAATTTACCTAGAAATGATTGGCCAGTAATGATATTGGAGGGGGATTTTAGGAGATGGTGAATAGAACGCGTTAAAGGCTCAAAGCTAATGTGCAAGTATGAATGGACTGGACGGAGAGGAGGGCAGCACCAATGCATAGTCTCAAAGATTATATTCTACGAGGACAAGAACTTCCAGGGCCGTCATTATGAGTGCAGCAGCGACTTTGCTGAGATGCACAACCACTTCAGCCGCTGTAACTCCATAAAGGTGGACAATGGCTGCTGGGTGGCCTACGAGAAACCCAACTACACTGGCTACCAGTACATGCTGAACAAGGGCGAGTACCCCGACTACCAGCGTTGGGCTGGCTTCAACGACTGTATCCGCTCCTGCCGTATGGTGCCCCCTTATCGAGGAAACTACAGGATGAAGATCTACGGGCGCTCTGACTTCAGGGGTCAGAACATGGAGATGATGGAGGACTGCCCCGACCTGCACGAGAGCTTCCACAGCCGCGACATCTCCTCCGCCAACGTCATGGAGGGTTACTGGATCCTCCACGAGCACCCCCACTACAGGGGTCGTCAGTACTTCCTTCGCCCTGGCGAGTACAGGAGGCACAGCGAGTGGGGAAGCTCCAGCCCCACCATCGGCTCCCTGAGACGTGTCACAGAGACCCCCTGAAGGTCAATCGagacccccctcttcctcccctaatGCAGCCCAATTCTAAATTCTGTATTGAAGCCCTACCCTCTATTGCTAGCACTGTTTGACTATTGTGTGTCTACTGTGGTCATCTGACCCTGAAATCACATGAATGTGATTGGGGGTTTTGTTCCATTTGGTGTTGGGTCTTCGCTGCTTTGCTTAGACTGGGAAAGTAGACCTCGGTGCTCAGGCGATGCTCGTATGGTAACGGTGATGGTCTCTCTAGCTTTGGTTGCTGCAGAGCAAAATGATGTGCTTTGCCAGTCCCCAACCCCCTGTCCTATAGGAACCAAAATAAATGAAAAGTTGATAAAAGTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1539627 lncRNA upstream 54304 17065748 ~ 17098008 (+) True G1346743
TU1539621 lncRNA upstream 85319 17065748 ~ 17066993 (+) False G1346743
TU1539623 lncRNA upstream 85427 17065690 ~ 17066885 (+) False G1346743
TU1540265 lncRNA downstream 1626 17158325 ~ 17159636 (+) True G1347308
TU1540267 lncRNA downstream 3742 17160441 ~ 17160739 (+) True G1347310
TU1540268 lncRNA downstream 4499 17161198 ~ 17161438 (+) True G1347311
TU1540269 lncRNA downstream 4855 17161554 ~ 17161900 (+) True G1347312
TU1540271 lncRNA downstream 5812 17162511 ~ 17212117 (+) True LOC110491469
XM_021567354.2 mRNA upstream 983 17149378 ~ 17151329 (+) True crygmxl2
XM_036946321.1 mRNA upstream 86794 16953441 ~ 17065518 (+) False LOC110491462
XM_036945875.1 mRNA downstream 30190 17186889 ~ 17197923 (+) True LOC110491467
XM_021564938.2 mRNA downstream 43158 17199857 ~ 17206714 (+) False LOC110491468
XM_036946350.1 mRNA downstream 43158 17199857 ~ 17206714 (+) False LOC110491468
XM_036946351.1 mRNA downstream 43170 17199869 ~ 17206714 (+) True LOC110491468
XM_021564941.2 mRNA downstream 50339 17207038 ~ 17212117 (+) False LOC110491469
TU1539652 other upstream 206068 16945928 ~ 16946244 (+) True G1346758
TU1538191 other upstream 1608775 15542391 ~ 15543537 (+) True G1345431
TU1538174 other upstream 1627744 15524002 ~ 15524568 (+) True G1345417
TU1537885 other upstream 1668799 15483147 ~ 15483513 (+) True G1345170
TU1537796 other upstream 1784856 15280053 ~ 15367456 (+) True G1345084
TU1540371 other downstream 79584 17236283 ~ 17273980 (+) False LOC110492842
TU1540858 other downstream 440020 17596719 ~ 17603471 (+) True LOC110491483
TU1542039 other downstream 1398478 18555177 ~ 18555452 (+) True G1348897
TU1542100 other downstream 1595924 18752623 ~ 18760420 (+) False LOC110491516
TU1542335 other downstream 1982328 19139027 ~ 19141677 (+) True LOC110491534

Expression Profile