RNA id: XM_021564978.2


Basic Information

Item Value
RNA id XM_021564978.2
length 5737
RNA type mRNA
GC content 0.43
exon number 2
gene id cdk5r1b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18088482 ~ 18095827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGATCATTTTACTTGAGACCCCCATTCATAATTTACTGTAGGCCCACAGGCCTATTTAATCCAAAGTGGTCTGTTCATGAAATAAGTGAACATTGAGCTGGATGATAGACTATAGGAATTTGTTGGAACATGTGTTTATTAAAATGTTAGGATGTTATGGTAAATTAATACACGCCTATTAGTTCTGTACAATGACATATAGACACTTAAAACGGGATGGTGCATCAGAAGAGACTTCATCCTGCACAATTTCAAATAAATGGCctaaatacatgtttgtttttttatatcAGGTTATCCCCAAGCTACGTTGTTATGTATGCCCCTCGTTTTAATAGCTTAGATGCGATCTAACATGTATGTTATTAGTAAATACAAATAGTTTTTATGTGGACATTTATTTATTGGCTAGGCCTACTTGTATTGTGTGATTGAAACAACCCTAGTCTACATGCTGAAAACCATTCATTGTTTTTCAAGAAAAGGATTTCAGTTCATTGAGTGCATTGTGCTTTGAGTTCATTGAATGTTTGTTGTGATGGGGCGGAGTTGCACATCTGTATGTAGCCTATCTCCGCTGCGCTGTATCAGCAAAATAAATGGACAGCGCACTACACACTAAAACACTAGTGAATATAGGCTACAAGATATATTGGGTAATTCACCTATTACAAACAGCCTTTGTGACTGCAGCCACACACAGCTGCAAATTACAGCACCACGGACAGAGCACAGAGCGGCGCCCGACCACTGCCTTTCTCCTTTTTTACACCAGCCATCCTTTCACTAGCCACAAGCTAGTGTGAGCGCAAAGAAACCCTCGAACCCGTATCTCTTGCGGTGAGGACCAAATGCACATCTTCATATCAGCATCCGTTCCACAGTTGCCTACCTACCGCCTGCGCAGCAGAGAGACTGGCGATTCCTTGACTATGTCAAGGTGTGCGGATAATCTGGCTTGATTAACGCCTTTTCTTTTCTTGGATTGTACGGTGTTGTGTTTTTTTAACCGCATTTTTCCAAGATGGTTAATAAGGTTTCACCTTGATGTGCACCATATCAAAGGAATTAGCTATTACTGTTAAAGAAGCCATCACTGCTGTGCTATTATTTTTTTCATTGACTGGAGGAAAAATATCAAGCACTATTGACCCAGCTGAGAAGAAGAGCTAAGTGCCCAGAGAGAATCTGCTCAGATCAACTCCTAATCCATCCAGCACGTACCTTCCTATCAGGACCTACTGTGGCATTAGATGCCTGAGAGGAACCCACGCTTGTAGCCAGGGTCTCCCAGCTCAGAAGCATTGAGGCCCTCAGGATCTCCCCTGCCATTCTCTCTGGTCTGTCATCCACTAACGAAATTGCTACTCGGTCACCATGGGAaccgttctgtctctctctcccagctacAGGAAGGCGTCCCTCTTCGAAGATGGGCCAGCCACGGTGGGCCACTACACAGCTGTTCAGAACAGCAAGAATGCCAAAGACAAAAACCTGAAGCGTCACTCGCTCATCAACGTTCTGCCATGGAAGCGCATTGTGGCAGTGTCAGCCAAGAAAAAGGGCTCCAAGAAGGTGCAGCCCAACACCACCTATCAGAATAATGTGACACATCTCAACAACGAGAACCTGAAGAAGTCTCAGTCCTGTGCCAACCTGTCCACCTTCACCCAGGACCAGAGCACCCCAGCCCTCGTCAAAAGCTCCAACAACGCTGTCTCGTCGGTCAAGAAGGCCCCCCTGACCAACTCCAATGCGGCCCCCGGCACGCCCAAAAGAGTGATCGTCCAGGCCTCCACCAGCGAGCTGCTGCGCTGCCTGGGTGAGTTCCTGTGCCGGCGCTGCTACAGACTTAAGCACATGTGTCCCACCGACCCGGTCCTGTGGCTGCGGAGCGTGGACCGCTCGCTGCTCCTCCAGGGCTGGCAAGACCAGGGGTTCATCACCCCGGCCAACGTGGTGTTTGTCTACATGCTGTGCCGCGATGTGGTATCCTCTGAGGTGGCAAACGAACATGAGCTGCAGGCCGTGCTGCTCACCTGCCTCTACCTGTCCTACTCCTACATGGGCAACGAGATCTCCTACCCACTGAAACCCTTCCTGGTGGAGAGCTCCAGGGACATCTTCTGGGACCGCTGCCTGTCCATCATCAACCTGATGAGCACTAAGATGCTTCAGATCAACTCGGACCCGCACTATTTCACCCAGGTGTTTGCCGACCTGAAGAACGAAAgccagaaggaggaggagaggagccgcTTGCTCATTGGTCTGGACCGGTGAGGGCCCTGGGGAGAGGGGCCGGGGAGGGGGCAGGGGCCTACTCCAGTCTGGCATTTCAAAATGGGGGAGGGGGATTGGTTGAGGGAGTAGGAAGAGGGGAGTGGGGAAGTTTTGATGGGAAGAGATTAATTTTGAGGGTTGATATAAGGGTTAATTTGGCATAGATATACCCCAAAAGTTTTTGATTATAAGCATGTTTAACAGCTAACATTACAACAGTTCACTGGAAGAGGGACATGAGAACACAGTTTGAttaaaaacaaatgacattttatgGTAAAAATATTATTTATCTCAATTTATCTTAAAACCAACTAATGTTTTTCGAAAGGAAAGAGGATCGTATTTCCACTGCACCTAAGAATGAAAGCTTTTGACACCTAAAAAAATGCCAGACTTGGGTACATCCTCTGTTTACAAACATGTATATAAAAACATTGAAAAATACAAAACCAACAATaatacacaataaaaaaaaaaacagtagaaAAAGAACACAAATGTGCAGCTATGAATGTGTAGAGgattgagaccagccacctgctGACTGTCTGAGATGCACTGCCTATTGTGTGACTGGGCTACTACTCACATCATGGATGAACAGACAAGCTGCAACCCTGGTTCTTTAGACTCTGAAGTGAACACCCAGCTCTGCTGCAGCGTAAACATGATTTGACCTGAAAGGAAAAGTGGGGCCACCGATGCAGATTCATGTATTGCGTTTATTGTTTGTGACTTGGCGAGAGGGGTTTGGTGGAGAAAGATTGGTTCAGAAGGATTTGAAAAAAAGCCTGCATTGCATTGTGGGATTTTTTTTTtgaccacaacacaacaggacATTAGGAATTACAGTACAACCTAAAGACACAACACTTGATGGTCGGTCACACTACATGTTAAGAAAGGCCTACTTTATTTTCATCTCAGAAAAAAATTAATGGATGTTCAAAGGCTCAAGCCCAGGGAGGCTTGTCTATTgccctttttctttttttaacttCAAAATAATAGCCTAATGCACGTGTGCCATGCAATTTTGGAGGGCAGGAATGACTTAACTGCATCTGCATTAGAGAATGCTGTGAACAAAGTGATAACTAGTTTATTTAGCTATGCTTGCTTAAATAGGCTATTTGTTTACCAAGGAATTCTTTTGTACTTTTGTCTGATGGTTGTGTCTAAAAACACTTGGGAATGAAGGTCCATATTGTGCTATAAGAAATTCAGCATTAACAAATGTTTAACTAGTGCCATATCTTTGATGAAAATCCTGTAGGTCTGAAAACACAGCGAAAGATGTCCAAATGTTGAGTGAACTTAATTTATTGTAATTTTATGTTCTCTTGGCACATCCCTTGTAATCAAAAGATCATGAATGAATGATCAATTGGTCTATTTCAAATTACAGGATATGGTGGGAATGAAGATTGATGGTTGTTGCAAATGAATGTTCCATGGAATAAGCTATAGATTAGCCCTAGATTAACAACCAGTAAAAATCTGACCATCGACAAAGTAACCAACACATCAGAGAGACCTTGAGTAAAGACAAAACCCCTTAGAACCTTTAGCACCCCTAGAACCCTTAGAACCCTAGGCACAGAGCAATCCCAAACCCAACACACCACCCAGCTCCACATATCAACAAGACAACATAACCATCAGCCAATGGCAGAGCATTTCACTCAAAACCACTCAGTGGCACAGCATAAACATTTACAGACAGCCTCCCCTGGCGTAATCTCTCCATGCCAATATTAATCAAATCTAAGACAACAATGTATTCAGCTGGGGAGGAGATGAGGCCATGGTCAGGTTAGATTCTAGTTGACCTCCATGGAGATAATCAGGTTTTCAAATCAGCTGAAGCCACTAGGATAAATGGAAGAGCATAGAGGGAAATAGGAACACCATGGCAACCTGGACTACATCTACATGAGAGCTTACGGAGCAGTCAAGATACATGGCAATCATTTGCATTGAAGAATTGTAGAGGCTAAAAAAGATTATAGAACTGATAGCATCGCCATCTCCAATAACTGAGATAAAGGGAGGTGGTAGATTTTTCTGTCAACCACTGTTTAATGTTGTAAGAGATATGTCGAATTGAATCCACAGATTAACAGGAATATGTTTTctatagtatacagtacagagACTTAACTGGAccttgggggaaaaaaacaacaaatgaaAATAATGCACATAAAAACAAGCGAATAAAAAGTAGTATTTGCCAGCTTTTTATCACCTCAACAGTGAGAAATTCCGCATGCTTTCTTTCATTAGTTGATTCTCAAATTTCTTTCTAGAAATGCAAAATGTTTATAGTCATATGCAGCGAATAAATACCATTTTCATTTGTATGTCTTTTCCATGCCCATGTCATGTGATGAAGGTTGTTCTTGGGGACTGTTGGTTGACATATGATAgatctctctcctctgctgtatCAGTGGGAGTCAAAGAGAAAAATGTATGGTGCAAATGGACATGGTTGTGGAGCGGTACCGTGGCATTGTGCCTTGTAATGGGAAATGGGTTGTTGTGTGTAGCGCAGTAGGAGGGACACACACTTTGGATGGGCTACTGCTCTGGGGAAAAAGCAGGGCATTGGGGTAAGGGGTCAAAAGCAGGGGAATCTTGACCCTCTCGCTGTTCACTTGCCCCAACTCACTAAAATGTGCCATTTTTTTGCCACTTGCATCACTGACTAGTTGTTTGAAAGACTTGGAAAAATCTtacaaaaaaaagagaaaaaaagtgaTATGTTTGAACATTTCAGTCGACTTCGATTTCAGTATCTTGTTGCGTACTTTGTAGAACAAAAAAAGGGTGTTAAAGAACATGAAAAGGGGGCATTTCAATGATGCATGTGAGCGCAAGTGTGTGAGAGTTTATCTGTACAGAAGAATGTGTGAATTTTGTTTTCTTATGACAAAGAGGAAGTGGAAAAGAGGATGCTCTACACTGATAGACTACTGGGACAGGATGTGATCACTGATAGACTACTGGGACTGGGATGTGATCACTGATAGACTACTGGGACGTGATCACTGATAAGACTACTGGGACTGGGATGTGATCACTGATAGACTACTGGGACTGGGATGTGATCACTGATAGACTACTGGGACTGGATGTGATCACTGATAGACTACTGGGGCTGGGATGTGATCACTGATAGACTACTGGGACTGGGATGTGATCACTGATAGACTACTGGGACTGGGATGTGATCACTGATAGACTACTGGGACTGAGATGTGATCACTGATAGACTACTGGGGCTGGGATGTGATTGTAGGGGGGGAGCTGTTATTttgaaaaagacaaaaaaaagacaTTGCTCCAATTGAACCTTTCTCAGTTTGTTTCTGCTTACTTTAATTTATTTTTGTACTGTGATGGAAAATAAAATGCACTGATTGTTCATGACGCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541373 lncRNA upstream 9495 18078753 ~ 18078987 (+) True G1348288
TU1541370 lncRNA upstream 12022 18076032 ~ 18076460 (+) True G1348285
TU1541369 lncRNA upstream 12986 18074934 ~ 18075496 (+) True G1348284
TU1541335 lncRNA upstream 15019 18050179 ~ 18073463 (+) True G1348264
TU1541325 lncRNA upstream 45490 18042422 ~ 18042992 (+) True G1348258
TU1541439 lncRNA downstream 90554 18186381 ~ 18191591 (+) True G1348351
TU1541469 lncRNA downstream 128927 18224754 ~ 18226611 (+) True G1348381
TU1541554 lncRNA downstream 253377 18349204 ~ 18349486 (+) True G1348461
TU1541559 lncRNA downstream 271756 18367583 ~ 18367787 (+) True G1348466
TU1541561 lncRNA downstream 276806 18372633 ~ 18372961 (+) True G1348468
XM_021564973.2 mRNA upstream 63840 17994355 ~ 18024642 (+) False LOC110491490
XM_021564974.2 mRNA upstream 63840 18010027 ~ 18024642 (+) False LOC110491490
XM_021564963.2 mRNA upstream 420283 17638981 ~ 17668199 (+) False LOC110491481
XM_036946366.1 mRNA upstream 420283 17639697 ~ 17668199 (+) True LOC110491481
XM_021564967.2 mRNA upstream 484880 17596160 ~ 17603602 (+) False LOC110491483
XM_036946373.1 mRNA downstream 156003 18251830 ~ 18323632 (+) True tbkbp1
NM_001195793.1 mRNA downstream 283697 18379524 ~ 18396021 (+) True tbx21
XM_021564408.2 mRNA downstream 316413 18412240 ~ 18416282 (+) False pnpo
NM_001165239.2 mRNA downstream 317408 18413235 ~ 18416746 (+) True pnpo
XM_021564985.2 mRNA downstream 328714 18424541 ~ 18429150 (+) True cdk5rap3
TU1540858 other upstream 485011 17596719 ~ 17603471 (+) True LOC110491483
TU1540371 other upstream 814502 17236283 ~ 17273980 (+) False LOC110492842
TU1539740 other upstream 931812 17155454 ~ 17156670 (+) True LOC110491464
TU1539652 other upstream 1142238 16945928 ~ 16946244 (+) True G1346758
TU1538191 other upstream 2544945 15542391 ~ 15543537 (+) True G1345431
TU1542039 other downstream 459350 18555177 ~ 18555452 (+) True G1348897
TU1542100 other downstream 656796 18752623 ~ 18760420 (+) False LOC110491516
TU1542335 other downstream 1043200 19139027 ~ 19141677 (+) True LOC110491534
TU1543395 other downstream 1641335 19737162 ~ 19738034 (+) True G1350066
TU1543613 other downstream 1934903 20030730 ~ 20037978 (+) True G1350275

Expression Profile