RNA id: NM_001165239.2


Basic Information

Item Value
RNA id NM_001165239.2
length 1504
RNA type mRNA
GC content 0.44
exon number 8
gene id pnpo
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18412240 ~ 18416746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATACGTTGAAGAATATCAGGGAAGTAGGTAAATACTTTAATCCCCAGGTTTCTTTGATAGCTTGCTGTCGAGCCTTATTTTATCAGTCACTTCGCACGAAAACTACCAGTTATTCTACAGACATGGATCTCAGTGACATGCGAAAAAAATACAAAGGAGACGACGAGTGCTTTGAAGAGAATCATCTTGTTTCTCTGGACCCCATCAAGCAGTTTGGAGATTGGTTTGATCAAGCCACAAAGTGTCCTGAAATCGGAGAGCCCAATGCAATGTGCATCGCCACATCCACAAGAGATGGACGTCCATCTGCTCGAATGGTCTTGTTAAAAGGCTACAGTGAAGAAGGCTTCCGGTTCTTTACCAACTACGAGAGCCGGAAAGGTGGTGAGCTGGAGAGCAACCCTTATGCATCTCTGTGCTTTTACTGGGAGCCTATCAACAGGCAGgtccgTATCGAGGGCAACGTGGAGAGAATCCCCTACCAGAGCTCCTGTGACTACTTCCACTCCCGGCCCAAGAGTAGCCAGATCGGGGCCGTTGTGAGCAGACAAAGCACTGCAGTCCCTGACAGAAATTACCTGAGACAGAAAAATGCAGAGCTGAAGGAAAAGTACAAGGACACAGATGTCCCCATGCCCGACTACTGGGGAGGCTATATCGTCAAGCCTTACTTGATAGAGTTCTGGCAGGGTCAGACCAACAGGCTACATGACCGCATCGTCTTCACGAGGCTGAAAAATGGAGAGCGTGTTCTAGAAGAGTATGAACATAATGCTGAGGCAGGCTGGGTCTACCAGAGGCTATCCCCATGAGGTCGGTTACATTAGGGGACATGGACTAAAGGCAAGGCTGGAGATTGGGCCTAGAGTACAACTCACTCATGATGTCATCATCGTCAACCAAATGACCACTGTGATCTCAATGCAGTAGGAGCCTCTCATGTTGATGTTGAATAACTACGTGCTATATgtgtctttaaaaaaacaaattatGGCTTGTTTTCTCCAATCGTTCTTGTTTAATAACAATCAAggagttattttttttttttatatatatatatattcctctgGATGGTTAGGAGGCCTGATTGCCTGTTGTCTCCAGGACAACAATGGGAAATGATCAACATGATGCGACTATACGGTCTAGCATGTAACCTGTGACCCAAGGTTTCACAAATCTCAATATGCTGTATGGCATACTTTACATTCCCTGACGCTTGATGTGCAAAGTCTGTCTCGTACAGAAGTCAATGTTAGATAATTATTGACAGTTAACCGGTTATCCAATGAAAATGCATTTCCGCGACCTCCACAACCCCTGGAAACTCTGTACTTGTAAAAAGCGCAATCACCAGTACTGTCTATCTGTTTAACATTTGTACCTGAGTTCCACTGTATTGGATGACATGTTCTGTCTAGCAGCTAATATGTCTTCTGAAGGCCCAAATCCACAGCAGtttcatgtcatgtcatgtaatACAGATAGTTTATTAGGC

Function

GO:

id name namespace
GO:0042823 pyridoxal phosphate biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008615 pyridoxine biosynthetic process biological_process
GO:0010181 FMN binding molecular_function
GO:0004733 pyridoxamine-phosphate oxidase activity molecular_function

KEGG:

id description
K00275 pdxH, PNPO; pyridoxamine 5'-phosphate oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541561 lncRNA upstream 40274 18372633 ~ 18372961 (+) True G1348468
TU1541559 lncRNA upstream 45448 18367583 ~ 18367787 (+) True G1348466
TU1541554 lncRNA upstream 63749 18349204 ~ 18349486 (+) True G1348461
TU1541469 lncRNA upstream 186624 18224754 ~ 18226611 (+) True G1348381
TU1541439 lncRNA upstream 221644 18186381 ~ 18191591 (+) True G1348351
TU1542001 lncRNA downstream 102099 18518845 ~ 18519056 (+) True G1348865
TU1542005 lncRNA downstream 105762 18522508 ~ 18522810 (+) True G1348869
TU1542006 lncRNA downstream 106160 18522906 ~ 18523194 (+) True G1348870
TU1542008 lncRNA downstream 106822 18523568 ~ 18524035 (+) True G1348872
TU1542011 lncRNA downstream 108906 18525652 ~ 18526637 (+) True G1348875
NM_001195793.1 mRNA upstream 17214 18379524 ~ 18396021 (+) True tbx21
XM_036946373.1 mRNA upstream 89603 18251830 ~ 18323632 (+) True tbkbp1
XM_021564978.2 mRNA upstream 317408 18088482 ~ 18095827 (+) False cdk5r1b
XM_021564973.2 mRNA upstream 388593 17994355 ~ 18024642 (+) False LOC110491490
XM_021564985.2 mRNA downstream 7795 18424541 ~ 18429150 (+) True cdk5rap3
XM_021564988.2 mRNA downstream 23267 18440013 ~ 18447730 (+) False nfe2l1b
XM_021564986.2 mRNA downstream 23268 18440014 ~ 18447730 (+) False nfe2l1b
XM_021564987.2 mRNA downstream 23590 18440336 ~ 18447730 (+) True nfe2l1b
XM_021564993.2 mRNA downstream 38530 18455276 ~ 18477327 (+) False LOC110491501
TU1540858 other upstream 809764 17596719 ~ 17603471 (+) True LOC110491483
TU1540371 other upstream 1139255 17236283 ~ 17273980 (+) False LOC110492842
TU1539740 other upstream 1256565 17155454 ~ 17156670 (+) True LOC110491464
TU1539652 other upstream 1466991 16945928 ~ 16946244 (+) True G1346758
TU1538191 other upstream 2869698 15542391 ~ 15543537 (+) True G1345431
TU1542039 other downstream 138431 18555177 ~ 18555452 (+) True G1348897
TU1542100 other downstream 335877 18752623 ~ 18760420 (+) False LOC110491516
TU1542335 other downstream 722281 19139027 ~ 19141677 (+) True LOC110491534
TU1543395 other downstream 1320416 19737162 ~ 19738034 (+) True G1350066
TU1543613 other downstream 1613984 20030730 ~ 20037978 (+) True G1350275

Expression Profile