RNA id: TCONS_00045593


Basic Information

Item Value
RNA id TCONS_00045593
length 1338
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_022948
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24086249 ~ 24101132 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCTTCAAAAGCATCTCTTTTGTCTTTTATCATCAGGTGAGGACAATGACTGCGACAACTTCACAGATCTGGACTTCCACGAGTCTTTCATAGGGACCAATCTATACGTGCGCCTGCTGCTCTACACCCGTGCCAACCTCGAGTGTGGTCAGGAGCTACCACACCACAACTTCACCCAACAACCCCTTTTTAACGTAACCAGACCCACCACCTTTGTCATCCATGGGTACCGACCCACTGGGGCACCGCCAATCTGGATCAACCACATCGTACACCTGCTAGCAGCTCAGAAGGACATGAACATCCTGGTAGTGGACTGGAACAGAGGAGCAGCAAACCTCAACTACTTAACAGCAGTGGCCAACACACGGGGCACGGCTCTGAACATCACCCGCTTCATAGAGAGCATGGAGAAAGAGGGAGCCTCTCTTGACTCTATCCACCTGATTGGTGTGAGCCTTGGGGCACATGTGGCTGGTTTTATTGGCGCAATGTTGGGAGGACGAGTGGGCAGAATCACAGGTCTGGATCCAGCAGGGCCAATGTTTGCCAGTGTTTCGCCTGAGGAACGTCTCGATCCAACCGATGCCCAGTTTGTAGATGTGCTGCACACAGATATGAATTCCTTTGGCCTCAGAGGAACGCATGGTCATATTGATTTCTATGCCAATGGAGGATTAGATCAGCCGGGATGTCCCAAAACCATCTTCTCAGGGAAATCTTATTTTGTGTGTGATCACCAGAGGTCAGTGTTTCTGTACCTGTGCTCTCTGAATCGCACCTGCAGTCTTACGGGATACCCGTGTTCATCATACAGTGACTTCCTCAGCGGCCAGTGTTTGCAGTGTGAGACCTTCAAGCCCGCTTCCTGTCCTGTTTTAGGTTATGACCTCAGCCAATGGAGGGACACGCTATTAAGACTAGGACAAACTAGAGCATATTTCTCAACAACAGCAGAACTCCCCTATAGCAAGACGAGTTACAGAGTGGACTTAGTTACCTGGAACCAGTTCCTACGCTGGGGAGTGGTCATACTCCGACTGCACAATGGGAAAAATGTAACCGAGGCACACATAGACAACAAACTGATGAGGTTTGAGCAGTATACCTCCACTCGGCTACTGGCGCAGTTTGATGAGGATCTATATCCAATTCAGAAAATATCATTACGGATCGTCACTGGAAATGTTATTGGACCTCGATACAAGATAAGGCTGCTTCGTATACGGATCTCTCCACTGGAAAAACCATACAGGTCGCTAATGTGTCGATATGATATCATTGTGGAGGAGAATGCGGAGGTGTCTTTCAAACCCTTGCCCTCATCACATTTGTAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0019433 triglyceride catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004465 lipoprotein lipase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004620 phospholipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-47 Predicted to enable lipoprotein lipase activity and phospholipase activity. Predicted to be involved in fatty acid biosynthetic process and triglyceride catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human LIPI (lipase I).

Ensembl:

ensembl_id ENSDART00000002953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046998 lncRNA upstream 73151 23973784 ~ 24013098 (+) True XLOC_022944
TCONS_00046999 lncRNA upstream 100414 23982487 ~ 23985835 (+) True XLOC_022945
TCONS_00045590 lncRNA upstream 108760 23973784 ~ 23977489 (+) False XLOC_022944
TCONS_00046997 lncRNA upstream 149361 23935071 ~ 23936888 (+) True XLOC_022943
TCONS_00046995 lncRNA upstream 338738 23744446 ~ 23747511 (+) False XLOC_022940
TCONS_00047000 lncRNA downstream 102623 24203606 ~ 24211341 (+) True XLOC_022950
TCONS_00047001 lncRNA downstream 352058 24453041 ~ 24458446 (+) False XLOC_022952
TCONS_00047002 lncRNA downstream 353146 24454129 ~ 24458446 (+) False XLOC_022952
TCONS_00045602 lncRNA downstream 626009 24726992 ~ 24730970 (+) True XLOC_022954
TCONS_00047003 lncRNA downstream 837774 24938757 ~ 24942201 (+) True XLOC_022958
TCONS_00045592 mRNA upstream 15225 24064562 ~ 24071024 (+) True XLOC_022947
TCONS_00045591 mRNA upstream 58014 24014880 ~ 24028235 (+) True XLOC_022946
TCONS_00045588 mRNA upstream 111117 23959107 ~ 23975132 (+) False XLOC_022944
TCONS_00045589 mRNA upstream 115203 23959487 ~ 23971046 (+) False XLOC_022944
TCONS_00045585 mRNA upstream 153724 23840821 ~ 23932525 (+) False XLOC_022942
TCONS_00045595 mRNA downstream 69931 24170914 ~ 24177641 (+) True XLOC_022949
TCONS_00045596 mRNA downstream 184768 24285751 ~ 24300350 (+) True XLOC_022951
TCONS_00045598 mRNA downstream 360358 24461341 ~ 24463346 (+) True XLOC_022953
TCONS_00045599 mRNA downstream 625973 24726956 ~ 24729124 (+) False XLOC_022954
TCONS_00045601 mRNA downstream 625988 24726971 ~ 24733255 (+) False XLOC_022954
TCONS_00045587 other upstream 153724 23841684 ~ 23932525 (+) True XLOC_022942
TCONS_00045578 other upstream 996744 23089389 ~ 23089505 (+) True XLOC_022933
TCONS_00045572 other upstream 1629288 22456844 ~ 22456961 (+) True XLOC_022929
TCONS_00045565 other upstream 2337549 21720480 ~ 21748700 (+) False XLOC_022923
TCONS_00045559 other upstream 2456409 21629725 ~ 21629840 (+) True XLOC_022919
TCONS_00045597 other downstream 354649 24455632 ~ 24455748 (+) True XLOC_022952
TCONS_00045600 other downstream 625975 24726958 ~ 24730970 (+) False XLOC_022954
TCONS_00045636 other downstream 2084427 26185410 ~ 26185500 (+) True XLOC_022980
TCONS_00045637 other downstream 2089569 26190552 ~ 26190634 (+) True XLOC_022981
TCONS_00045660 other downstream 2922526 27023509 ~ 27030978 (+) False XLOC_022994

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_06045598_06051674.mRNA False 1999 mRNA 0.44 9 CI01000018 6045251 ~ 6051982 (+)