RNA id: TCONS_00004421


Basic Information

Item Value
RNA id TCONS_00004421
length 116
RNA type rRNA
GC content 0.55
exon number 1
gene id XLOC_002321
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37147669 ~ 37147784 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgccacagccatatcaccctgcagcccaagagcggtTACTCACTAAGCtatgcagggctgagcctggtcaatagctggatgggagaccacacagGAAAACTAGGTGGCTGTTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005928 lncRNA upstream 83279 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00005926 lncRNA upstream 83735 36805036 ~ 37063934 (+) False XLOC_002317
TCONS_00005927 lncRNA upstream 83735 36805073 ~ 37063934 (+) False XLOC_002317
TCONS_00004414 lncRNA upstream 164051 36805085 ~ 36983618 (+) False XLOC_002317
TCONS_00005727 lncRNA upstream 236170 36870984 ~ 36911499 (+) False XLOC_002317
TCONS_00005929 lncRNA downstream 330461 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004428 lncRNA downstream 352462 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005930 lncRNA downstream 352462 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004430 lncRNA downstream 352691 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004431 lncRNA downstream 356072 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004417 mRNA upstream 21107 37083662 ~ 37126562 (+) True XLOC_002319
TCONS_00004416 mRNA upstream 21108 37083654 ~ 37126561 (+) False XLOC_002319
TCONS_00004413 mRNA upstream 369155 36741502 ~ 36778514 (+) True XLOC_002316
TCONS_00004412 mRNA upstream 398018 36741502 ~ 36749651 (+) False XLOC_002316
TCONS_00004407 mRNA upstream 435968 36695597 ~ 36711701 (+) False XLOC_002314
TCONS_00004422 mRNA downstream 25245 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004423 mRNA downstream 33996 37181780 ~ 37254019 (+) False XLOC_002322
TCONS_00004424 mRNA downstream 34842 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004425 mRNA downstream 121070 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004426 mRNA downstream 253054 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004415 other upstream 186979 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 478635 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 704822 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 859166 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004370 other upstream 987382 36158967 ~ 36160287 (+) False XLOC_002289
TCONS_00004438 other downstream 1340924 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1400305 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 1535882 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 2544593 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 2612970 39760754 ~ 39760879 (+) True XLOC_002356