RNA id: TCONS_00046043


Basic Information

Item Value
RNA id TCONS_00046043
length 4095
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_023278
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6395385 ~ 6501211 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCATAATCCGGATATCGTTACTCTTGCAAGTGGGATTTGTTATAGGATCAAATTATAGATATGTGGAACATGACCGGGACCTGAAAGGAAAGCTGCCCATTTACAACACGCACAGCAACCAGCACGCGCACCTCCGGAAGCCCCATTCGGGTTTAGTGCAGAAGATCGAGGAGCAGGTACCCAAAGTAGTGACTGCGTTTCTGCACACGGGGGATTCCTCCACCTTAAAGCACGCCAACTGCTCCAGGAGATATGAGCTGGCGGTGTTGCGGGGAAGGACGCGCGGAGACGCGCATCACTCCATGCGCAGCGTCCTGGACACGGTCCTTCACGCCACAAACTTCCTCAACATGATATTACAAACAAACCGATCCAGAAATCACAGCCCCAGACATGCAGACATGGAGTGGTACAACGCGCTGGTCAGGAGTATCCTGGAGGGAGACCTCAAGATCCACCGAGCGGTGGTCACCTTGAGCACAGAATCCCCTCCTGAAGGACCACCTGTTTACCTTCAGGCTACACGGGCAGGTGGAGAGATCATTCTGCAGGATTTATCCAACATTACCCATCGGATGTTGAGAAACAGAACGGCTGACACCGAGTGGTATCATGAGCACAAACATAAAAAGAAGACACATCTGCAAAAACGAGTGCTGAGTCAAGATTTTGCCTCGTTTGACGCGTCCGTGCGCAGTGGAGAAAGTTATATTACCGAAAAAACTCAGATACACTGGTCAGCTCCGTACTTGGAGTGCGAGAATGGGAATTTCATACCCAGATGGCTCTTGACACTGTCAGCTGGCTTCTATGGCCTTAAACCCAACAGGAACCCAGACTTCAGGGGTGTTGTTCGAGTGGACGTCAGCCTGCAGGATGTGGATATTGACCAGTGCTCTGCAGACGGCTGGTTTGCAGGAACACACAGGTGTAACATCACCACTATGGAGTGTTTGCCGGTTCCTGGGCATGGATTTGTGCTGGACAAGTATAAATGTCACTGCAAAAGTGGCTATTATCATCCAAGCAGAGTTGCAGTGAATGGCTTTAAAAGGAAAGCAGGAGGGAAGGGGACCGAGGGTTTGTCCCATAACAGGGATGTTCCAGAAACTTCCAGCCACTGTCTGCCCTGCCAGGAAGGCTGTTCTTTCTGCAAGGACGATACGCCCTGCGTGGCCCGGGGTGATGGAGCCCTGCGTATGGCGGTGCTCTCCTTCCAGGGCCTGTGCATGCTGGTGGATTTCATCAGTATGGTGCTGCTTTACCATTTCCGCAGGAACAAGAGTATCAGAGCATCAGGACTCATTCTGCTGGAGGCCATCTTGTTTGGAGCTCTTCTCCTGTACTTTCCGGTGGTGATCCTGTACTTCCAGCCAAGTGTTTTCCGCTGTATCCTGCTGCGATGGGTCCGTCTGCTCGGGTTTGCCACTGTATACGGAACAGTCACTCTCAAGCTCTAcagGGTCCTCAAGGTGTTCCTGTCACGTACAGCCCAGCGGATCCCTTACATGACCAGCTGGAGAGTGTTGCGTCTACTGTGTATCATCCTGTTGATCGTGTTATGGTTCGCAATAGCCTGGACCTCCGCTGTTTGTCAGAATCCAAACAGGCACCTCGCTCTCATCAGTGTGGGCTTCACCACTGACGGACTGCAGTTCAGCATGTGTCTGCTGGACCGCTGGGACTACATGATTGCTGTGGCTGAGTTCCTGTTTCTTCTTTGGGGTGTATATCTTTGCTTTGCGGTGAGGACCGTCCCATCGGCATATCACGAACCACGCTACATGGCCATCGCAGTTCACAATGAGCTCATCCTCTCGGCCATATTCCACATTTTAAGGTTCACACTTGCTCCTGAATTGCACCCAGACTGGATGCTGATGCTTTTCTTTGCTCATACACACTTAACGGTGACTGTCACTTTGGGGTTGCTGCTTGTGCCAAAGTTCTTGTTTGCGGGCACACATCTAAGGGATGACATTGCTACAGAAGCTTACGAAGATGAATTGGACATGGGGCGGTCTGGGTCATACCTGAATAGCAGTATCACATCTGCTTGGAGTGAGCACAGTCTGGACCCAGAGGATATCCGGACACCAGAGGAAATGGGCCAGCTAAGTTCTATTAATGGCTGTGGCGTAAGGTCTTGCGACAGTCTCTGGGAAAAACGTACCAACGAAGAGCTGAAGAAACTCTACTCTCAACTGGAGATTTACAAGAGGAAAAAGATGCTGGCTAACAATCCTCACCTGCAGAAGAAGCGAAGCTCCAAAAAGGGCCTAGGCCGCTCTCTCATGCGACGCATCACTGAGATCCCAGAGACAATGGGACGCCAGTGTAGCCGGGACGACAAAGACCAAGGTGAACACGGGAGCAACCATAACAGCATCTGTGTGCTGAGAAAGAATCCTTTTGATCCCTCACACTCTGTTAAGCCTGCTAAAGATGAATCCTTAAAGAGCAAAGTTTTCTCCCTTAAAAAGTCCCACAGCAGTTACGACCATGTTCGAGACCACAGTGAAGATTCCAGCAGTTCGGCAACTGACAAGATGGAAGTCACAACCACAGAGGGCTCTCTTCTCGAAACCCTAATGGGAAAAAAGCTGGTCAAAAAGTCTTCTGAAAAGATTGATGTAGCCAGTGAGTCAACAGAGTCGGTTCCCTTGGTGTGCAAGTCAGCCAGCGCTCACAATCTGACAGCTGATAAGAAACCTATTCACCCCAGAACATCCATGCTGCAGAAATCTCTAAGCGTTATTGCCAGTGCCAAAGAGAAAACTCTTGGTCTAACAGGAAAGGCCCAGGGTGTAGAGGATTCAACAAAGAAAGCCAATCAAAAGAACAGTGAGGGCAAGACCTCAGCTGAAGCTGAAGAAAAAGAAGGTTATCCGAAGATGATTGTCAGTCAATCAGTGGAATACAAGCAGACAGCAGCTAAAACGGGTATAATGAAGCCACAAATGAGCGGAAGCCAGCCCTCCATTTGCTCAGAAACAGCCAAGGGGAAAGACCTGTGTGACCTCTCAGAAGTGTGCCCTTGGGAAGTGGAGGATTTGCCAACTCCCTCCGAAAATAAAGTCCAGAAACATGTGTCTATTGCTCCTGAGCAAACAAACACAGTTCGTGGAGGTAGCAGCAAGACGACAAAGTCACAACAGCAAAAGCAAAAAGGAGCAGAGCAGTCACCTTCTGCGGCCAGGCATCCAAACAAGAAAGCTGCAGATAGAGCAGACATATGTCCGTGGGAGGAAGGAAACGAGGATCATGGTCAGCCAACAGGGCCAAAACCTCACTCCAATACTAAGTCTGCCATGTCTCAACAACAGGCTTCCAGAGAGGTTGCCAAGGTTTTAAAAGCAGACGTCTGTCCATGGGACTTTGAGGAAGTATCAAGCAAGCCAAAGGACTCCCCTCGCTCCCCTGATCAGAGCAGACCAAAAAAGGGCACCACACCAACTGAGATCAAAGGCAAAAAAAGCTCCTCGCCTACTGAAGTCAAGGGCAAGGGTACTACGCCTACAGAGGTCAAAGCAAAGAGTATTCTCTCTGAACCTACTAAATCCACAGGCAGCTCACTGCAGCCGCCCTCTAAAGCAGACGTGTGTCCATGGGACTTTGAGACTATGTCAAGTCCCACCTCTGAAAAGACCCCTTGTTCTTCTCAGGTTCCTAAATCAAAGGAGACCCATGCTATAAAGAAGGGAAATTCCCCTGTCAGATTATTAGAGTTGGAAAGAGGAAACACAAAGGGTCCAGATGAGGACAAAATGAAATCAAACACAAAGTTCAGCTCTGGCAAGACAAAAGAAAGACCCGTGAGCCAGTCTAAAATAATGGCCGAGGTTTGTCCGTGGGATGTTGATAGTAGTCAGGGAAATGTTTCaatggaaaaacaaaaaagcCCAAATGTTGCATTAGCAAAAAGCAAACAAGCAGACGTATGTCCTTGGGATTTTGAAGAGGCAGCAACTAGTAAGGAGGCCAACAGGGGCACCGGTGGCAAACAGAAAAGTTCAAATTCTAGTGGTGTTAAAACGGCAGATGTCTGTCCATGGGACTTTGATGATCAAGCATCGACAAAAAAGGCATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-18 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; nervous system; and pharynx. Orthologous to human GPR158 (G protein-coupled receptor 158).

Ensembl:

ensembl_id ENSDART00000109040

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046039 lncRNA downstream 52488 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047150 lncRNA downstream 294265 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00047147 lncRNA downstream 557987 5805398 ~ 5837398 (-) True XLOC_023263
TCONS_00047151 lncRNA upstream 105901 6607112 ~ 6647264 (-) False XLOC_023279
TCONS_00046050 lncRNA upstream 143219 6644430 ~ 6647199 (-) True XLOC_023279
TCONS_00046062 lncRNA upstream 1072599 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00047152 lncRNA upstream 2751523 9252734 ~ 9286642 (-) False XLOC_023304
TCONS_00046093 lncRNA upstream 2768738 9269949 ~ 9286635 (-) False XLOC_023304
TCONS_00046042 mRNA downstream 19611 6360423 ~ 6375774 (-) True XLOC_023277
TCONS_00046041 mRNA downstream 49420 6338066 ~ 6345965 (-) True XLOC_023276
TCONS_00046040 mRNA downstream 49738 6338033 ~ 6345647 (-) False XLOC_023276
TCONS_00046036 mRNA downstream 135052 6161268 ~ 6260333 (-) True XLOC_023275
TCONS_00046034 mRNA downstream 136516 6161037 ~ 6258869 (-) False XLOC_023275
TCONS_00046046 mRNA upstream 12632 6513843 ~ 6546479 (-) False XLOC_023279
TCONS_00046047 mRNA upstream 12821 6514032 ~ 6644734 (-) False XLOC_023279
TCONS_00046048 mRNA upstream 69254 6570465 ~ 6628359 (-) False XLOC_023279
TCONS_00046049 mRNA upstream 72110 6573321 ~ 6647275 (-) False XLOC_023279
TCONS_00046051 mRNA upstream 156101 6657312 ~ 6671549 (-) True XLOC_023280
TCONS_00046038 other downstream 52488 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00046037 other downstream 61712 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046033 other downstream 236507 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046012 other downstream 1629701 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046009 other downstream 2077092 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00046055 other upstream 270097 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046060 other upstream 1062150 7563361 ~ 7564846 (-) False XLOC_023285
TCONS_00046061 other upstream 1062150 7563361 ~ 7568326 (-) False XLOC_023285
TCONS_00046064 other upstream 1118165 7619376 ~ 7624766 (-) True XLOC_023286
TCONS_00046073 other upstream 1466273 7967484 ~ 7967600 (-) True XLOC_023292

Expression Profile

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