RNA id: TCONS_00046042


Basic Information

Item Value
RNA id TCONS_00046042
length 3639
RNA type mRNA
GC content 0.37
exon number 11
gene id XLOC_023277
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6360423 ~ 6375774 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACTTACAGAAACTATTGCGTGTGGCCTGCAGTTCGGACAGCGGTCAGATCATCAGATCATCAAAAACACCAAACTCTCATCATGGGAAACTGTCAAcCAACAATTGTGCCTTATGAAGACTTTGATGTAATTGCGGACATTAAGGCAATCCGCAAAGCCTGCAAAGGTTTCGGAACGGACGAGAAAGCCATCATAGACATCCTAGCCTATCGAAGTGCAGCTCAGAGAATGGAGATCAAGCAAGCCTACTTTGAGAAATATGATGACGAGTTGGTGGATGTTCTGAAGAGTGAGCTGTCTGGGAATTTTGAGAATGCCATTCTTGCCATGTTGGACCCTCCTCACGTGTTTGCAGTTAAAGAGCTCAGGAAGGCAATGAAGGGCGCAGGAACAGATGAGGATGTGCTGGTGGAGATTCTGTGCACTGCTACCAATGATGAGATTGCCTTTTACAAAGAGACCTACACCCAAGTGCATGACAGGGATTTGGAGAGTGACATTGAAGGAGACACCAGTGGGGATGTGAGGAGACTGCTAACATTGCTTCTCCAGGGTAACAGAGACGAGAGCTACGAGGTTGACGAAGCACTGGCGGAGCAAGATGCCGTTTCGCTGTTTGAAgcTGGAGAGGGCAGTCTTGGCACAGATGAATCTACTTTCAGTTTCATTCTGGCCACCAGGAACTACTTACAACTTCAGGCCACGTTCAAAGCCTATGAAGCCATTTCTGGAACAGATATTCTGGATGCAATCGATAAGGAAACCTCTGGAACTCTGAAGGACTGCTACACCACGCTTGTGAGGTGTGCTAAGAACCCCCAGCTGTTCTTTGCCCGGAGGTTGAACGCCGCTATGAAAGGAGCCGGAACCGATGAAGACACTCTCATCCGCATCATCGTGTGTCGCTCAGAGGTTGATCTGGAGACTATTAAAGACATGTACCTGGAGAAATACGACGTGACTCTGAAAGACGCCATCAGCTCTGAATGCGGAGGCGATTTcaagcgcctcctgctggccatCCTTCACTGAGAACAACATTCAGCCACTGGCGCTCCAGGCTTTAACTATAGTCACCATCAAGGCAAACTAACAAGACTTATTTTCTGTCATGTAGTctacaaacatgtttttatatatataaaggacAGTTTAAAGTAAAGAAATCAAGTTTTATTACACCGTACAACTATATATTCCAGtatatattaaagggatagttcactcaaaaatgaaattttgcATATCATTTACTTTCAATTTCTATgaagttattttaaagaaagctgaaaacatgtaaccactgacttccattatagGAAATATaaacactatggaagttaatggttgcaggtttccaacatatTTCGAaatatctttagtgttcaacagaagaaagaagctcataaaggtttaaaacaagtaaatgcTAAGTAAtagcagatttaattttttttatgtgaactatccctttaagaatcaccactaaaaatatatatgattccAAGCAGAGATATGCATTTGTGTTGGGTTTCTGTGACATTCTGTGTCAAGACTGGCCAGTTAAACGTAAGTAGAGTCTTTACAGGATTACAAGATAACATTGTTAGACTATGATAATAACAGGTTGAGAAGCAGTGGCGTACATTTCCTGCCAGTATTTTTCCATACCAAAAACCTCACAGTTTTAAATTGCACGTGACAATGTGAATTCTGAAAATGTGCTTAAGTATAAAAagaaatgttaaaataacaatCTGACATGATCAGCGAAACAATCATCTGTTTATGAGACGTCTGCAGCTAATGTGTCGCATCTGTGGTAAAATATCTGCATCAGTGAAGTGATCATTTTTAATAACGTTAACACGAGACTAAAGTATTTATGTTATTTAGatgagatttttttaatataacttaCATTATGTTTTAAAGTATCTGAAACACAAGAATTCAGACAGAGTTGTGCTGTTCTCCCCCCTCAAATAAAAGCCTATTTTAtcagattaatataaaaacattcactATACAGGAGATTGGACTCATATCTTCTGTTTTAACACAGTTGTATccattgaataaaataaaagattttaaagtATGTTGATTTGTCTTGCACATTTAATGAGGCACTGGCATTAATATAGTAattattgtgtattatttttttaatcaacgtTAAACTGCATAACAGGATCTTAAATCACTGTCCAAGCAAAGTCATGTTGTTTCTGTTACTTACCTCTTCTCTAGTCAAGCAGGCCTAATCACAGTCACCTTTAATTAGTTGATTActtgactttattattattattttctagtttATAACATTCAGCATGTACTAAAGGATGAAAAACTGTCAAATAATCAAGCAATAACTTAAAATCTAAATGTGGACAGGAAGCCAAATCTAACGATACTAGACAATACTAACCCTAACCACCCTTCCAGTCAAATATTGCACAGTAATGTTTGTGTTGGGAAATGACCATAGTAAAAGTGGGTTGTGTGCATTGTGTGTGACATTGCATcgttgagtgatgcaatctcagcttgcatcataaagatACTATTGTTTAACTCTGGCAATTTTGCATTGCATTTTATCATTGTAAATTATGGAAAGTTTGAATCATTTTACCGACTCTGAGTCTCATTTAGCGAGATAATTTCATttcgttcaatttgccaaaatgtctttaaaatgttgcttcttgaacacatctacaactagcgcAAATGATAATCACACAATACTACGAACATAAATGCTGCAAGATAAAGAAAATAAGATGTCTTTGCTTACCTGGGTCTTTAGTTCGCTTATCTGAAGCCTTCaagttgattcattcattcattcacatgaCACTGACAGCAATAAGCTTAACCAATAAATATCGAAAAAAGAtccatgattattattataaataaaattaattccaGTTAATATTAAAAGATTCTACAAAGATCACAGTCAAGCTATatcagtttttaatcattttagatttaattttgtATGATCACTTGAATATAATGATTAGgggggtggcatggtggttcagtggttagcaagaaggtcacttgttcagCTCcaggctaggccagttggcatttctgtgtggagtttgcatgttggcatgggtttcctccaggtgctccaatttccctTACAGTCCACAGTCAAAATTGGAAAAATTTGGCTATAatttatgagtgtttcccagtcctAGCTTGTGACTAGAAGGGCACTGCGTCAAAcatgtgccagaatagttggtggttcattccgctgtggtgacccttgataaataagagactaagccgaaggaaaattaataaatgaacaacgaTTAAGTATttggtacattttttttaatgctgaatGACAATTGAAgattatttcacccatattttatcattttaaaagttatataTAACATTAAAGAAGACACTTCACTTGGATTCGGTGGTTTCCATGTATATCAAACCACTTTTGTGAATGTAGTTTAATGCCAAAATGTGACATCTTGTCCCTCATATTACTGAAAAATGTGCTTACTGGATGCTGCGACTGACCAACTAGATCTCTTTACAAGTTTCCAAAGGGtcttataattaataaacatttattaaaca

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-010406-1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Orthologous to human ANXA13 (annexin A13).

Ensembl:

ensembl_id ENSDART00000013294

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046039 lncRNA downstream 17526 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047150 lncRNA downstream 259303 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00047146 lncRNA downstream 523025 5795528 ~ 5837398 (-) False XLOC_023263
TCONS_00047151 lncRNA upstream 231338 6607112 ~ 6647264 (-) False XLOC_023279
TCONS_00046050 lncRNA upstream 268656 6644430 ~ 6647199 (-) True XLOC_023279
TCONS_00046062 lncRNA upstream 1198036 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00047152 lncRNA upstream 2876960 9252734 ~ 9286642 (-) False XLOC_023304
TCONS_00046093 lncRNA upstream 2894175 9269949 ~ 9286635 (-) False XLOC_023304
TCONS_00046041 mRNA downstream 14458 6338066 ~ 6345965 (-) True XLOC_023276
TCONS_00046040 mRNA downstream 14776 6338033 ~ 6345647 (-) False XLOC_023276
TCONS_00046036 mRNA downstream 100090 6161268 ~ 6260333 (-) True XLOC_023275
TCONS_00046035 mRNA downstream 101554 6161037 ~ 6258869 (-) False XLOC_023275
TCONS_00046034 mRNA downstream 101554 6161037 ~ 6258869 (-) False XLOC_023275
TCONS_00046044 mRNA upstream 19611 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046043 mRNA upstream 19611 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046045 mRNA upstream 20606 6396380 ~ 6501211 (-) True XLOC_023278
TCONS_00046046 mRNA upstream 138069 6513843 ~ 6546479 (-) False XLOC_023279
TCONS_00046047 mRNA upstream 138258 6514032 ~ 6644734 (-) False XLOC_023279
TCONS_00046038 other downstream 17526 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00046037 other downstream 26750 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046033 other downstream 201545 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046012 other downstream 1594739 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046009 other downstream 2042130 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00046055 other upstream 395534 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046060 other upstream 1187587 7563361 ~ 7564846 (-) False XLOC_023285
TCONS_00046061 other upstream 1187587 7563361 ~ 7568326 (-) False XLOC_023285
TCONS_00046064 other upstream 1243602 7619376 ~ 7624766 (-) True XLOC_023286
TCONS_00046073 other upstream 1591710 7967484 ~ 7967600 (-) True XLOC_023292

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000327_00230933_00241220.mRNA True 1845 mRNA 0.41 11 CI01000327 230114 ~ 241220 (-)