RNA id: TCONS_00047151


Basic Information

Item Value
RNA id TCONS_00047151
length 537
lncRNA type sense_over
GC content 0.45
exon number 3
gene id XLOC_023279
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6513843 ~ 6647275 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGACATCAGTAGTATCTGTCGCGCCGCCAACTGGAAGTAACCGAGATCAAACTGGTCGTTCAAAACGTTGATACATACGTGCGCTGCGTTTAAACGCTAGGCATTTCTTCGCGTCCGTATCAGCTACGTTTTGCGATTTCACTGTGTTTTTCTTTCATCATGAAGCTCCTCATTGGGCTGTGGAATACTGTATGGTCGATAGATTGAAAATCGATTGCAACGCATCGGATATTTGGATATTAATCTCGCGTTTGGCAGAGAAAATATGCATTATGATTCATGGTCATCTAATAACTGGAACAGGACTTTACAGTGTTCGGACATGAAGAAATCGGACGGTGTGGATTAGACTATTGGGAATATACCACTTTGATTTCTCTCATCTCAATGTTGGGCTCCAGAGGACCTCTGCCTTTGTGCTCTGAAATGAAATAATGGCGACGCGTTGGACCGCATCGTCACAACACGATGAGAAGAAACATCCAGCCGTGTCGTCAGTTTGTGAGAAACTACCCCACCTCAAGGTCCATATTTC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0005543 phospholipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046039 lncRNA downstream 264215 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047150 lncRNA downstream 505992 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00047146 lncRNA downstream 769714 5795528 ~ 5837398 (-) False XLOC_023263
TCONS_00046062 lncRNA upstream 926546 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00047152 lncRNA upstream 2605470 9252734 ~ 9286642 (-) False XLOC_023304
TCONS_00046093 lncRNA upstream 2622685 9269949 ~ 9286635 (-) False XLOC_023304
TCONS_00047153 lncRNA upstream 2622687 9269951 ~ 9286635 (-) False XLOC_023304
TCONS_00047154 lncRNA upstream 2622687 9269951 ~ 9286636 (-) True XLOC_023304
TCONS_00046046 mRNA downstream 60633 6513843 ~ 6546479 (-) False XLOC_023279
TCONS_00046044 mRNA downstream 105901 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046043 mRNA downstream 105901 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046045 mRNA downstream 105901 6396380 ~ 6501211 (-) True XLOC_023278
TCONS_00046042 mRNA downstream 231338 6360423 ~ 6375774 (-) True XLOC_023277
TCONS_00046051 mRNA upstream 10048 6657312 ~ 6671549 (-) True XLOC_023280
TCONS_00046052 mRNA upstream 25936 6673200 ~ 6678640 (-) True XLOC_023281
TCONS_00046053 mRNA upstream 40628 6687892 ~ 6898302 (-) False XLOC_023282
TCONS_00046054 mRNA upstream 54453 6701717 ~ 6897884 (-) True XLOC_023282
TCONS_00046056 mRNA upstream 647665 7294929 ~ 7321934 (-) False XLOC_023284
TCONS_00046038 other downstream 264215 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00046037 other downstream 273439 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046033 other downstream 448234 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046012 other downstream 1841428 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046009 other downstream 2288819 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00046055 other upstream 124044 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046060 other upstream 916097 7563361 ~ 7564846 (-) False XLOC_023285
TCONS_00046061 other upstream 916097 7563361 ~ 7568326 (-) False XLOC_023285
TCONS_00046064 other upstream 972112 7619376 ~ 7624766 (-) True XLOC_023286
TCONS_00046073 other upstream 1320220 7967484 ~ 7967600 (-) True XLOC_023292

Expression Profile

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