RNA id: TCONS_00046046


Basic Information

Item Value
RNA id TCONS_00046046
length 3858
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_023279
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6513843 ~ 6647275 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGACGGGATTGAGGgtccagatgccactgtagttgtGGTTCGAAGGGAAAAGTCTGGATCTCAACCTATCCGTCCACATTCCTACATTCTGGCAGTGAATGATACACAGGGAGTAGCTGAACAACCCCCAAACTCTAACACATGCTGGTTGCCGAACGATACCCGGCGGGAAATGCACATGAGGAAAGTAGGAGACCAGTGTAAGATCTCTATCTCAAGCAACCTTGATGACTCTCTGGACTCCATTCCCTTCATTGACGAGCCGTCAAGCTCCAGTAATGACCATGACACCACACACATTCCTGCGTCTGCCGTGATTTCCAGCACACCTGTCATCACCACCATCCCACCCAGTCCAACGTCCCCTACTCCAGTAATACGCCGACAGCTGTCCCATGACCAGGATTCCTTACGACTCACTATTCTGGAATCAGATTCGAAAACGGAACGCTCCAGATCCTTCGATGAGGGCTTGGATAACTACAGAGAAGAGCGGAGAGGACGGTCGATTAAACACACCCATGGATTCAAGGGCCTTCGAAAGGCTGTTGACCGCTGCTCTGAGGACTCGGGCTCTAGAAGAGACTCTAATTCAGATGTCTTCACCGATGCCACCAAGGAGGGTTCACTTTATTTCCGGCAGCTCAACTCAGAAAAGAGCAAGCGTGTCGGCAGTAGCATGCGCTCATGGAAGCAGATCTACGCTGTGCTTCGTGGCCACTGTCTCTACCTGTACAAAGACAAGAGAGACGGACAAACCAATGCCAACTCTCAAATCGAAGAAGAGCCCCTGCCAATCAGTATCAAAGCCTGTCTGATAGACATCTCCTACAGTGACACGAAGAGGAAGAACGTCCTGCGGCTGACAACGTCAGACTGTGAATATCTGTTCCAGGCAGAAGATCGAGAGGAGATGCTGTCCTGGATCAGAGTCATTCAAGAAAACAGCAACTTGGATGAAGAGaaTGCAACTGTTACAAGCACAGACCTTATCAACCGGAAAATAAAGGAGTACAACACTCTGATGAGtCCACCCAGCAGTAAGACAGAACCTTCCCCCAAGGCGTCCCGCCAGTCACTGAGCATCAGGCAGACGTTACTGGGAGGTAAAGGGGAGAATAAAGCCACAAGCCCTCACTCACCGAACAAGGAACATGACAGGAAAGCCATGCACAAAGATGAAACCAGCCCGCCCAAGGATAAGGGCACATGGAGGAAGGGCATCCCTGGACTGATGAGAAAGCCATTTGAGAAGAAACCGTCTCCTGGAGTCACTTTTGGAGTAAGACTAGACGACTGTCCTCCAGCTCAGAACAACAGAtttgttccTCTGATAGTTGAAGTGTGCTGTAACCTGGTGGAAGAACGAGGACTGGAATACACAGGCATCTACAGAGTGCCAGGAAACAACGCTGCCATCTCCATCATGCAGGAAGAGCTCAATAACAAGGGAATGGCTGACATAGATATTCAGGATGATAAATGGAAGGACTTGAATGTGATCAGCAGTTTACTCAAATCCTTCTTCAGGAAACTTCCTGAACCGCTCTTCACTAACGAAAGATATGCAGACTTCATCGATGGCAACAGAATAGAGGATCCCGTAGAGAGACTCAAAGTGCTGAAGAGATTGCTTCACGAGTTGCCTGATCATCATTATGAAACGCTGAAGTTCCTCTCGGCACATCTCAaaactgtggctgaaaattcAGAAAAGAACAAGATGGAGCCACGGAATCTGGCTATTGTGTTCGGGCCGACGCTGGTGAGAACATCTGAAGACAACATGACTCACATGGTCACACACATGCCAGACCAATACAAGATTGTCGAAACGCTCATTCAGCATtatgactGGTTCTTCACTGAGGAGGGTGACAACGAGCCTACGaCTACAGTCCAGGAGGAAAGTGCTGTGGAGTCTCAGCCTGTGCCTAATATTGACCACCTGCTGACCAACATTGGCCGGACAGGAACCTCTCCTGGGGAAGTGTCAGATTCACCAACAAGTGACTCTGCTAAATCTAAGGGCTCTTGGGGATCAGGGAAGGACCACTGCAGTCGCGAGTTCCTTCAACCTCGAGTCTCCTCCATCTTTGCTGCGGCCAACCGCAAACGAAAAAAGCACAAGGAGAAGCTGCAACCCAGCAGCTCTGATGATGACCTTGATACCATGTTCACCAAGAACAATAACCCTACTCAGAAGCAGAGCCACCAAAGCCAGGAGGAGGACGAAGCAGGCAGGTCTAGCTCATGTGGAAAATCACTTGTGGGAGACAAGGATGGCATAAGTGCAGAGTCCACCCCGAAAAGCAAAAAAGAGCACAGGAACTCTTTCTTCATGAAAGACAAAACCTCTTCAGTGCTCTCCCCTTCACCCAAGCTCTCGTGTTCACCCGGGTTCAATCGACGCAAATCTGGTCCTCCCAAATGCTCCATCTCAGATCCATCCTCACAGTTAGATGAGACCACATCAGACTTGGGCACCATGAGCTCTGGAGCTTCCGTCCCAAGAACCAGACCTCGGAAATGGGGAACAACAACACCTCCAAGCATTGATCTTCTAGCAGCTCCTGGTGGGGCTTCGGTGACTGCAGAGGTCAGCTCTATTACCTCAGACTACTCAACCACATCCTCTACCACCTTCCTGACAGGAATGGAATCGATTACATTGAGCCCGGAAGTCCAGTCTGTGACGGAAAGCCGGGGAGGAGATGAGGCAGATGACGAGCGCAGTGAGCTCATCAGTGAGGGAAGACCAATGGAAACAGACAGCGAAAGCGACTTTCCAATGTTCAGCCCTGCCATTGGTAGACTAGAGATGCCAAACACAGAAGATAGCAGCAACACCACACCAAAACTAGCTTGCCGCTTGCTGCCTTCCCATAAGCTGATTGAATGTGACTCCTTGAGCAGGAGACGTTCCCTACGACAAAAGACGGACAGCGATTCATCGGTGGAGGCAGGAGCTGGTGGTGGCAATCAAGGGGTCAGCAAGAATGAATCAAATAGACTGTGTCGAGTTCTGGAAGTGATGAAGAGAGGCCGCTCCACTAGCAGTCTGAGTGCCCCATCACGAAGTGAATCAGACCAGGTTGAGACTCCATGGCACCTTAAAATCACAGAGAGGCTCAAGTTCCGTTTACGTGGCTCTGCTGATGACATGTTCGGTGTGGGCACACAAAAGACCCGCTCTACAGAGACTCGTGGTAAGAAAAAGGGCATCCGGCGACGGCATACTATGGGTGGGCAACGGGATTTTGCTGAACTAGATGTCATTCATGATTGGAGAGAACAGGGCGGGGTGGACCAAGGGGCCGAACTGCCTGCTGTAGAGCGCCTAAGACCCAAGGGTGACTCTCAGAACATGTCTATTCGGGATTGGATTGTTAGTGAGCATCGTCGCAGGGGTTCACAGGGTTCGCAGGCTAGCACAGAACTAGAAGGTCAAGCTGGGAAAGAGACAATAGAAACGGACAAAACCCATCCTAGAAATTCTGAGCAACTGAGTTCCTCTGCCTCCTTATGTTCTCAGTCCAGCTCTGAACAGGTAAATGGAGGTGCAAAGGGCAAATCTAGAAACAGCCTGAATTCAGGGGCTGATGCTCATCCTCAAAAACTGTCAGGAGCCCAAGTGGTGCGCTCACGATTCTACCAGtatctttaaaaagaaaattatcatCTGTGTGTATGTAAGTGATtcaaaatgtgtgtgcatgtatagaTAGGCCTGTTCAAACCAAGATGCATATTTGGTATGAACATTTGATCAAACCAATAAGAAATGTGAACGCATCTGATCAGACTGGTGTGGAAATTCACATGCAATCAAATCAACACTTTGTTTATCATGGGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090918-5 Predicted to enable GTPase activator activity and phospholipid binding activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP21 (Rho GTPase activating protein 21).

Ensembl:

ensembl_id ENSDART00000160538

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046039 lncRNA downstream 170946 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047150 lncRNA downstream 412723 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00047147 lncRNA downstream 676445 5805398 ~ 5837398 (-) True XLOC_023263
TCONS_00047151 lncRNA upstream 60633 6607112 ~ 6647264 (-) False XLOC_023279
TCONS_00046050 lncRNA upstream 97951 6644430 ~ 6647199 (-) True XLOC_023279
TCONS_00046062 lncRNA upstream 1027331 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00047152 lncRNA upstream 2706255 9252734 ~ 9286642 (-) False XLOC_023304
TCONS_00046093 lncRNA upstream 2723470 9269949 ~ 9286635 (-) False XLOC_023304
TCONS_00046044 mRNA downstream 12632 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046043 mRNA downstream 12632 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046045 mRNA downstream 12632 6396380 ~ 6501211 (-) True XLOC_023278
TCONS_00046042 mRNA downstream 138069 6360423 ~ 6375774 (-) True XLOC_023277
TCONS_00046041 mRNA downstream 167878 6338066 ~ 6345965 (-) True XLOC_023276
TCONS_00046048 mRNA upstream 23986 6570465 ~ 6628359 (-) False XLOC_023279
TCONS_00046049 mRNA upstream 26842 6573321 ~ 6647275 (-) False XLOC_023279
TCONS_00046051 mRNA upstream 110833 6657312 ~ 6671549 (-) True XLOC_023280
TCONS_00046052 mRNA upstream 126721 6673200 ~ 6678640 (-) True XLOC_023281
TCONS_00046053 mRNA upstream 141413 6687892 ~ 6898302 (-) False XLOC_023282
TCONS_00046038 other downstream 170946 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00046037 other downstream 180170 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046033 other downstream 354965 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046012 other downstream 1748159 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046009 other downstream 2195550 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00046055 other upstream 224829 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046060 other upstream 1016882 7563361 ~ 7564846 (-) False XLOC_023285
TCONS_00046061 other upstream 1016882 7563361 ~ 7568326 (-) False XLOC_023285
TCONS_00046064 other upstream 1072897 7619376 ~ 7624766 (-) True XLOC_023286
TCONS_00046073 other upstream 1421005 7967484 ~ 7967600 (-) True XLOC_023292

Expression Profile

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