RNA id: TCONS_00046035


Basic Information

Item Value
RNA id TCONS_00046035
length 7904
RNA type mRNA
GC content 0.44
exon number 36
gene id XLOC_023275
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6161037 ~ 6260333 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATGGAAATAATAGTTTCCATAGACATTTTAGCCTAAAGTCATCCATTCCCAGTTTTACACAACAGCCAAAAGAGGGATACACTAAGTCAGGAATTAAAAAGTTTGATTTTGACAAGTAGGTCATGTTACTACTCTTTCTATATGGATCTTTGGTAATCCGCAACATGGCTGTCAAGCAAATATAGCCCTAGTTGTGCTAAGACTAACTTTAAAGTGCATACcgttgtgtatttttcatgcaaagGTTCTTTTACTCGTCACATAGTGATTGCACAGCTTTTCTTAATCACATTTTACACCTGTGCAGATTTGATATCAACAGATTTTATCAACTATAAGTCAAATGGAAAAACAGCAAGCATACTGTCTTTAACTGCAAAGAACATCTGTCTCAAGACGCAATATGTGCTCTTTCTCCTCAGGAGATCACTCGGGAAGATGTTTCCTCGCTCAGGGAAATCCATCATCTTTGACAGCTTCCCAGATCCGTCTGACACCTGGGAGATCATTGAGACTATTGGCAAAGGGACTTATGGGAAAGTTTACAAAGTGCATAATAAGGTCGATGGCAGCAAAGCCGCAGTCAAAATACTGGATCCAATCCATGACATCGATGAAGAAATTGAAGCTGAGTATAACATCCTGAAAGCTCTTTCAGACCATCCCAATGTTGTTAAATTCTTTGGGATGTTCTACAAGAAGGATGTCAAGACTGGAGACCAGCTATGGCTAGTACTAGAGCTGTGTAACGGAGGGTCTGTCACAGATCTGGCCAAAGGTATGCTAAAAAGAGGAGATCGCATGGAGGAACCCATCATAGCCTTTATTCTACATGAAGCGCTCATGGGTCTTCAACATTTGCACGTCAATAAGACCATCCATCGAGACGTCAAGGGCAACAACATCCTGCTCACCACGGACGGAGGAATCAAGCTGGTTGACTTTGGGGTTTCAGCCCAGCTCACAAACACCCGACTAAGGAGGAACACTTCGGTGGGAACGCCCTTCTGGATGGCTCCTGAGGTCATCGCGTGTGAGCAGCAGCTGGACTCCACATATGATGAACGCTGTGATGTTTGGTCATTGGGAATCACAGCCATAGAGCTAGGTGATGGAGACCCGCCTCTCGCTGAACTCCATCCAATGAGAGCTCTCTTCAAAATACCAAGAAATCCACCACCCACTCTACACCAGCCAGAGCTCTGGTCAAACGACTTTAACGATTTCATACGCAAGTGTCTGATAAAGGATTTTGAGCTCAGGCCCAATGTGCTTGACCTTCTTCAGCATGTCTTCATCAAACAGATTGTGGGCCGAGAGAAGACGCTGCAGAAGCAGCTGATGGAGCTAATCGACCTCAACCAGCAAATGGGCATCATTGAGAAAACAAGCCTTCTCGGAAAATCTGACAGGGACAGTGACTCCAGGCATGAGCGTATCCACACCAAGAAAAACAGCTACATGAAGTCTCAAAGTCAAACGTGTGACGACGCTGATGATCTGGCAACCCTAGAGGTTCTAGATGAAAACACAATCACCGAACAGCTACAGAGACGTTACACAAAGGAGCAGATCTACACCTACGTCGGAGACATCCTTATAGCGGTCAATCCATTTCACAAAACCGAGTTATACACACCTGAGCATACTAAGAGTTATGTTGGCGCCAAACGAACATCAAACCCCCCACATATATATGCAGTGGCAGACATTGCGTATCAGTCCATGGTGTCCTATAATGCAGATCAGTGTATTGTCATCAGTGGAGAAAGCGGCGCTGGGAAAACAGAGAGTGCTCACCTGCTAGTCCAACAGCTGACTGTCCTTGGAAAGgcCAACAATCGGACCCTCCAGGAGAAGATTTTGCTGGTTAACAGTCTGGTCGAGGCATTCGGAAATGCCTGCACTGTGATCAATGATAACTCCAGTCGCTTTGGCAAATATCTGGAGATGAAGTTCACCTGTGGTGGGACAGTAGTGGGAGCTCAGATCTCTGATTATCTGCTGGAGAAGTCTCGAGTCGTCCACCATGCAGTAGGGGAACGCAACTTCCACATCTTCTATTATATCTACGCCGGACTGGCAGAGAGGAAGAAACTCGGCCATTACAAGCTGTCAGACAGCAAAACTCCAAGGTATCTCCACAATGAGAATGTTAAATTAGTGCCTGACATTGTGGGCAATGCCTTCTATAAGGAGCAGTTTGAGACTGTGGAGCAGTGCTTCAAAGTCATCGGCTTCACCCTAGAGGAGCTCGGGAGTGTTTACGGCATCTTAGCTGGGATCCTGAATACAGGAGACGTCGAGTTCACGTCAGTGGCTTCAGAACATCAAACGGACAAAAGCAACATTTCCAACATGGCAGTACTAGAGAGTGCTGCATCGCTGCTGTGTATCCGTGCAGATGAGCTACAGGAGGCTCTGACATCTCATTGTGTGGTCACTCGGGGTGAAACCATCGTCAGGTCAAACACAGTGGAGAAGGCCACAGAGGTGCGGGACGCCATGGGTAAAGCCCTATATGGACGCCTGTTCAGCTGGATTGTCAACCGCATCAACTCTCTGCTCAAACCAGACAACCAATCAGGGGAGGACGACAAGGGTCTGAACATCGGCATCCTGGACATCTTCGGCTTTGAAAACTTTAAGAGGAACTCTTTCGAACAGCTCTGCATCAACATCGCCAATGAGCAGATCCAGTTCTACTTCAACCAGCACATCTTCGCCTGGGAACAGGATGAGTATCTGAATGAAGATGTAGACGCTCGAGTAATTGAGTATGAAGACAACCGGCCGCTGCTGGACCTGTTCCTTCAGAAGCCCATGGGCATGTTATCGCTGCTGGACGAGGAGAGTCGCTTTCCTCAGGCAACTGACCAGACCCTCGTCGAGAAATTTGAGGATAACTTAAAGTCCAAAAACTTCTGGAGACCAAAGAGGGTTGACCTGGGCTTTGGAATCCATCACTATGCAGGCAAGGTAATCTATAATGCCGGCGGCTTCCTGGCTAAGAACAGAGACGCTTTGCCTGCTGATATAGTTCTTCTGCTGAGGTCATCAGAGAATGAACTGACCCGTAAACTGGTTACGCATCCGCTCACTAAAACAGGTAATTTGGCGCACACTAAGGGCAAAGCTGTGGGCTCTGCTCGGATGGGCACACAACAATCACAGCGCTTTGCCAAGTCTTCCTCTCGGAAATTAACTCCACCCATTGACAAATCAATGCTTGCCTTGCCTGTTGACTCTGTACAAACGACGGAGAGCACTGGAGACACCACACATCACCCCAGGGAGACCACCAACATGAAGACTCAAACTGTAGCGTCGTACTTCAGATATTCTCTAATGGACCTGCTATCAAAGATGGTGGCAGGCCAGCCTCATTTTGTTCGATGCATAAAACCCAACAATGATCGTCAAGCTCACAAGTTTGACAGGGAAAAGGTTCTGATCCAACTACGCTACACTGGTATTCTAGAGACGGCCAAGATCCGCAGACAAGGCTACTCTCATCGCATTCTCTTCAACAACTTCATCGAAAGGTACTCCATATTAGCATTTAGAGCTAATGAAGAGCCAGCAATCAGTCCTGAGACGTGTGCGGTTATTTTAGAGAAGGCCAAACTGGAGAACTGGATTTTGGGCAAGACAAAGGTCTTTCTGAAGTATTATCATGTGGAGCAGCTGAATCTGATGGTCAGGCAGACCACTGACCGGATTGTTCTAGTTCAGGCATATGTACGGGGCTGGATGGCATTCAAGCGATACTGTTTGCTGAAGGAAAAGAGAGAACAAAGCGCTGTGGTGTTACAatcagCATACAGAGGACACAAGGCTCGGAAAAGTATAGCTGATGACAGAAGTAAAGCAAAGTCTGAAATAGTTTTCACCCAACTTCAAGCTTGGTGCAGAGGATATTTGGCAAGGCAGAATTACAAGGAGCTACTAGATGAGAAGAACAAAGCTGCTGCAAAGATCCAGGCCCATTACAGGGGACAAAAAGAGAGGAAGAGTTTCCAGAGGAAAAAGGAAGCCATGCAGAAGGAAAACACAGAGAAGACAGAAAGAGTGACAGAGGTCCCTTTAGAAGCAGACGATCCTGTTTCAGAGGAACCGCTACAGGAAGGAGGTGAAGTGGAAATGGATGATGCTGATGAAAAGGCAGCTGTGGTCCTCCAGAGCAACTACCGAGGATACAGAGAAAGGAAGAAATTCAAGGAACGTCAGGAACGGAATAAGACCTTGAGCGGAGATGAGCTGGATGCTTCCTCATCCACCCCTGAAGAAATGACTTCTGGAGAAGATCTGGAAGCTACACGAGAGGACACGCAGGAGAATGTTGAGAAAGAGGGGAATGAGGTTGAGGAAGGTGGAGGAGATGAAGACCCTGAGCAGGAAGCCAAggcagccactgttctccagagcAACTTCAGAGGTCATAAGGAACGTAAAAGACTCCAAGAGGAAGGAAAGATACCAGTTAGAGGAAAGAAGGAGATTAAGAGTCCTACAGATGAGGAGGAGCTTCCTATTCCAGATCCACCGCCCCCTGAGGAATTGATGGAGTTTTCAGAGGAAATGGAATTTACTGAAGAAAATCCACCAGGAGAAGAAGACGAGGCCAAAGCTGCTGTGGTCCTTCAGAGCAACTTCCGTGGCCACAAAGAAAGGAAAAGACTCCAAGAGGAAGGGAAAATCCCAAAGAAAAAGACTAAAGAGGAAATGGATGATCCAGGAGCTTCAGAACCAGACATTGCCATTGAGGAGCTTCCACCGCCTCCTTTAGAACTTGAACATGATCAAGAGCTAGACTCTAGTCCATCAGGAGGAGATGAGGAACACGCTGCAACTGTTTTACAAAGCAATTTCAGAGGACACCGGGAGAGAAAGAGACTGAGAGCTGAGAAAGAAGAGGCAACAGGAGGAGGGCAAAGCACTGGAGATGTGGAGGAGCAGGAGAACAATGACGTTCTAGACATTACAGATGTTCAGCTGGAACGAagggaagaagaggaggaaggaCAATACGATGAGGAGCAGGCAGCCATTAAAATCCAGAGCAATTTTAGAGGCTATAAAGACCGAAAGAACCTGAAAGCTACATCTCAAAAACAAGATGAGGAAGTGGAGTCACTCTTCAAACAGGTATCCAAGGCCTCTGAAGACTACCTTTCCCTTCAGAAGAAGTTAAATGAAATCATCCTCGCCCATCAGCTTAACCCCAGCAAAAATGGCATGTTTGTGAAAGGACAACCCATGAATGGCTACATGGGCTACTACCAGCCACCAGCTGACACAAAGCAGTCTCGAACACCACGCCGCGCACAACAACCCAAGACCCTGAACACGCCGGAGGACTCCACATACTACACACTTATTCATAGGTCTGTCCAGGACGATAAAAGGAGGCCGCGGAAACAAAGCCCAAAAAAGTTGGACAACGATGACCAATACTACCAGGGTTTGTCCAGCAGTAAATCCACCAGCCTTCCCAATGAACGACGCCGGTCGAGCAAGCGGAGGGCTTCTGATGAAAGACGCTCCTCTGAAAGACCACTCTCTGATGTCCCCAAATCTGAAATCCCCAAAGACCCATTGGAGAAGAGGCACTCGTTCTCTAAAATGCCCTCTACAGAGAGTCAAAGCGAGGACAACCCCTACGACTACAGGAAGATACTGAGAAAGACCTCCCAGAGACGACGACTAATAACACAGCCATAACCCCGAACATCATCTTCTTTGAAGACTTGTGTAAATATGTCATTTCAAACCTATAAGACTGGCATTCTTGcatggaacacaaaagaagacatttggaATAATGTACCTGCTGCTCTTTTCCATGTCATTTCAAGCATCGAGAATAGAAGCTTTTGCTCTTCAACAAAACGGTGCTTGATTCATCAAAGATTCATTCTTTTGAATCAGATGAGATGATTCGTTCCCAAATCAAACTGATCCAATTGCAGCTTACTAAAGAGGAAGATTATCGTTTTGGGGtgatctgtgttttttttaagtaatacacAGGTTTTCTGTtcacttattgttattatttttgttggttTTACCAAAGAACTTTtgcattattaaacaaaaactgtaacactctacttaaaggggtgttcataagactacTTTAAACCTTTATAATTATGACTTGACACACGTTAggaatttaaatgagattgtattTATGCTTTTAACATTTATCATgtctttatactgtaaaaaatcctagttgccttacatttttaagcagaATCAAATCAACctcatgagtccattgaacttatattatgacttaaaacagcttgcctaacttataaaattaagttagaacatgattaacttagttaatAAGCTGTAATACCTAataacatatgctgtcaggactgattgatcatttcatttttttacagtgcagctcaGTTATGacgttttaaatgcaaagatgacgttgtttgttatgacaacttgacattacccagacaacaaaacttgtcataaatctgtcataaacatgactgtcgggcgaggcagtggcgcagtaggtcgtgctgtcccctcacagcaagaaggtcgctaggtcgctggttcgagcctcggctcagttggcgtttttgtgtggagtttgcatgttctccctgcgttcgcgtgggtttcctccgcgtgctccggtttcccccacagtccaaacacatgtagtacaggtgaattgggtaagcttaattgtccatagtgtatgagtgtgtgtggatgtttcccagagatgggttgctgctggaagggcatccgctgcgtaaaaacttgctggataagttggcggttcattacgctgtggcgaccccggattaataaaaggactaagctgacaaaaaaattaatgaatgaatgaacatgactGTTCTGAAGCTATAAATGTGTTATCAATTTTATGACAGCGTCATTAATACATTTTGTTACCTCAACTACAGTGACAAGTTTAAATtgtcattaaaattaaattaaatattcaattaaCTTAGTTAATAAGCTGCAATGACCTAATAACATATGCGGTCAGGACTGattgatcatatcatttttttacagtgcagctcaGTTATGacgttttaaatgcaaagatgacgttgtttgtcattgacaacttgacattacccagacaacaaaacttgtcataaatctgtcataaacatgaatgTCTTGAACCTATTATAAATGTGTCATCAATTTTTTGACAGCAtcattaatacattttctttacCTCAACTACAATGACAAGTTTAAATTgtcattaaaactaaattaaatattagtgatgctgttaaaagttatttgaaatagtaatgacacttttaataaaacatttagatAACTAATACAGTTTGTTCTACTGAAAACGTGGTCAGAAAgatattcatgacacaattaaaatgcctcatgacaatcatgtctTATGAACAAGCCTAAAGAGCCTTAGTTTAAGTACGTAGTTGTGCAAATAATGAGCACTCAATACTTTATGCTGTACAGAATGTAACATTAGTTGATAATCAGAGTTAGCATTGTAACAGGACATTTGAGCTGCACTTGCTTTATTTTTATCTCAGGTTTAGCTTGTTTTCTGTATGCAAGTCTCTTTATGAATAAAGATGTCTGTGAAGATATTCATAAGGTGAACTTTATATATGTACCAGTCAGAATTACTGTCTGTACTGCATTCTGGGCTCTTTGATTTACTGACTCATCCCATTTTGCTGCATggacttaaacacacacacacacacacacacacacacatatatatatatactgtaaaaaaaatccgtaAATGTatggtttatttctggcagctggggtgccagaaaaaaaaaagtaaaataacggccgttaaat

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041026-4 Predicted to enable several functions, including ATP binding activity; actin binding activity; and cytoskeletal motor activity. Predicted to act upstream of or within protein phosphorylation and visual perception. Predicted to be part of myosin complex. Is expressed in axis; notochord; photoreceptor inner segment layer; polster; and retina. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 30. Orthologous to human MYO3A (myosin IIIA).

Ensembl:

ensembl_id ENSDART00000178667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047150 lncRNA downstream 59917 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00047146 lncRNA downstream 323639 5795528 ~ 5837398 (-) False XLOC_023263
TCONS_00046039 lncRNA upstream 32724 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047151 lncRNA upstream 348243 6607112 ~ 6647264 (-) False XLOC_023279
TCONS_00046050 lncRNA upstream 385561 6644430 ~ 6647199 (-) True XLOC_023279
TCONS_00046062 lncRNA upstream 1314941 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00047152 lncRNA upstream 2993865 9252734 ~ 9286642 (-) False XLOC_023304
TCONS_00046032 mRNA downstream 2104 6133147 ~ 6158933 (-) False XLOC_023274
TCONS_00046031 mRNA downstream 64480 6094164 ~ 6096557 (-) True XLOC_023273
TCONS_00046030 mRNA downstream 82815 6040029 ~ 6078222 (-) True XLOC_023271
TCONS_00046029 mRNA downstream 122964 6035995 ~ 6038073 (-) True XLOC_023270
TCONS_00046028 mRNA downstream 123012 6034990 ~ 6038025 (-) False XLOC_023270
TCONS_00046040 mRNA upstream 79164 6338033 ~ 6345647 (-) False XLOC_023276
TCONS_00046041 mRNA upstream 79197 6338066 ~ 6345965 (-) True XLOC_023276
TCONS_00046042 mRNA upstream 101554 6360423 ~ 6375774 (-) True XLOC_023277
TCONS_00046044 mRNA upstream 136516 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046043 mRNA upstream 136516 6395385 ~ 6501211 (-) False XLOC_023278
TCONS_00046033 other downstream 2159 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046012 other downstream 1395353 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046009 other downstream 1842744 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00045986 other downstream 3241516 2919405 ~ 2919521 (-) True XLOC_023236
TCONS_00045981 other downstream 3471843 2689078 ~ 2689194 (-) True XLOC_023231
TCONS_00046037 other upstream 27730 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046038 other upstream 32724 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00046055 other upstream 512439 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046060 other upstream 1304492 7563361 ~ 7564846 (-) False XLOC_023285
TCONS_00046061 other upstream 1304492 7563361 ~ 7568326 (-) False XLOC_023285