RNA id: TCONS_00046030


Basic Information

Item Value
RNA id TCONS_00046030
length 3287
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_023271
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 6040029 ~ 6078222 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAGGAAAGAGGCATTTTGCTCAAAACGGATTTATGACCCCATCACCTACTTATTAAAGCGGCCAGATAACCCAAGATGGATGACATTGATGCCATGTTCAGCGATATGCTGCAGGAGATGGATCTCCTAACGCAGAGTTTGGATGCAGAAGTAGATTCTGCACCTTTGGCTAAACCTCCCACCATTCCTGAACCTCAGGAAATGAACTTTTCCATCGGTTTCGCAAATTTTAATgAATCCCTGAACGATCTGGAAGACAATGACTTAGACGCCTTGATGGCTGACCTTGTGGCAGATATAAGTGCCACGGAGGAAAAGTTTGCCACAGAAAGAGACACATCAAAGGGGTCAGTTTCAGTTGCCCCAGCGCCCTCAAAGCCTCAGAGTAACTTTAGCCTCCCAGCATCATTCGACAGCTCTAAACCAGCAACTTCCTCCAACTCCATCGCAGCTCCACCTCCACCACCCGCATTTAAACCTTCAAAAgaggaagaagaggaacaGCTCAAAGCAGATAAAATCAAGCTCGCTTTGGAGAAACTAAAGGAGGCCAAAGTTAAAAAGCTGGTGGTGAAAGTGGAGATTACGGATGGCAGCTCGAAGACTCTGATGGTGGATGAGAGACAAACAGTTCGAGACGTGATGGACAACCTCTTTGAGAAGACACACTGCGACTGCAATGTGGACTGGAGTGTGTGTGAGACCAACCCTGACTTACAGACTGAGCGGGCCTTTGAGGACCACGAGAATCTAGTGGAGCCTCTGTCTACATGGACGAGGGACACTGAAAACAAAGTGCTTTTCCAGGAGAAAAAACACAAGTACGAAGTGTTCAAAAACCCTCAGATCTTTTATTTGTGGAAAAAGGATAAGAAATCTCTAAAGGACATGAAAGAAAAAGACAAAGAACAACTTCTGGAGGAGAACTTCTGTGGAGCCTCAGTTATTGTGCCTGACCTGGAGGGCGTTCTGTATCTGAAGGAGGATGGAAAAAAATCCTGGAAACAGCGCTACTTTCTGCTCCGGGCCTCGGGGTTGTATTATTCACCTAAAGGCAAGACAAAGGCTTCAAGGGATCTGGTGTGCTTGGTGCAGTTTGACAATGTGAACGTCTACTACTGCAAAGAATATAGAATCAAATACAAAGCACCAACAGACCACTGCTTCATGCTCAAGCATCCTCAGATTCAAAAAGAATCACAGTACATCAAGTTTATGTGCTGTGATGACGAATGGTCCATGAATCTGTGGGTTACCGGGATACGTGTTGCCAAGTATGGAAAGCAGTTATATGACAACTACAAGGCTGCTGTGAGGAAAGCATCAGGCTCTGCATCCTGGGCTAACCGCACTATCCAGGCCTCCTCCACTGCATCAACACCCTCCCCTACACCTAAAGCCAAAGCTGCAAACGGACATGCTCCTCAGCCTCCAGTGGAAAACAAGGTTCCATCCAACCAGTCATCATTACCACCACCTCCACCTTCAATGGATTTCCTGCCTCCTCCACCACCCGACCCCATGTTTCCTCCTCCTCCGCCCGCACCACCAGCACCACCAGCGCCTCCTGTTCCAGTCAGCTCAACCAAAGTCAACAAGTTTCCTCCTCCACCTAAATTCCCACAATCCTCCTTCCCTCCACCAATGGATGATCTTCCTCCTCCACCACCTCCTCCAGAAATTGCCGATCTGCCCCCTGACTTTCTGCCTCCTCCACCACCTAGTTTTGGGTCTCATGGTGGAGAATCACTCCCACCACCACCTCCAGACCCCGTCGCCTCCCTTCCACCACCTCCTCCTGCTTTTACATCTGCAGGCGGAGCACCTCCGCCACCTCCACCCCCGCCTCCACCACCAGCTCCAGCACCAGCCGCCAACAATCCAGCCGGCAGTGTCAGAAAAGTGGCTCCACCTCCACCTAAGAGGACTACTCCTCAACtaacagcgccctcaggtggcgACTTCATGTCAGAACTCATGAATGCCATGCAGAAAAAGCGCACTCAACCATGAACCTGAGGGTTATGGAATGGACCATTGTTTTGGAGTGACATTAGAACACACCGCTTTAATTATGTTGTTTAAAATGTCTGCATTACACCACCAAAAACATGTACATGTAAATACTCATGCAACTAATCATATTAAGGGATGTTATACAAtttccggccactttattaggtacgtctatccaactgcttgttaacgcaaatttctaataagccaatcacatggcagcaactcaatgcatttaggcatgtagacatgatcaagacgatctgctgcagttcaaaccgagcatcagaatggggaagaaaggggatttaagtggctttgaacgtggcatggttattggtgccagaagggctggtctgagtatttcagaaactactgcaCTGAAAAAactgttgcatgcagaactgttgcaaacaatttgtttgtgttgaatttaaacaaccaaattaagtttagtaatgttcaacttaatttgtttgtttaaattcagcccaaaaaaaatgtttacaacctcttaacataaaaaaattgagtaaatccaaggaatcatctttgaatcatttttttcagtgtggtttcttggatatgacaatgagttcactgtactcaaatgacctccacagtcaccagatctcaatccaaaagagcacctttggaatgtggtggaacgggagattggcatcaggGATGTGCAGCCATGCAGTCAAACATAATGCACTCAAATgaagtgagtgacgtcactgtgaggggtagggttatgggtggggttaggtgagctcattaaaaagcatcggatgcagctcagattgcactgcaccaggtctgcatccaaacCCCTctccaatatggaccaaaatctctgaggattatttccagtaccttgttggatctatgccacaaaggatgatggcagttctgaaggcaaaaaggggtccaaccaggtactagtaaggtgtacctaatatagtggccggtaAGTGTTTAATGAGATAAAATAGATTTTGTGATTTGGCTTAGTGACTGGTATTAAATATCTCAGTTTCAGAGCTAAAAGAACTAAGTCCTTTATGCACAACTACAGTagttaaaaaaactgtttcaaAATGGCTTACTGTCAATTAATCAAACATCCGATTTTAGATGCAATTTTCTCAATCTGACCATGACTGGATAATATTAAAGAGAGATGTAAATGAggtgtaatatatttatattgtaccaaaataaatgtattactattaaAATCAAGGTTGCTTTTTCGGTgaaaaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04611 Platelet activation

ZFIN:

id description
ZDB-GENE-040426-1318 Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in cytosol and plasma membrane. Is expressed in atrioventricular canal; cardiac ventricle; and presumptive cardiac ventricle heart tube. Orthologous to human APBB1IP (amyloid beta precursor protein binding family B member 1 interacting protein).

Ensembl:

ensembl_id ENSDART00000146830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047146 lncRNA downstream 202631 5795528 ~ 5837398 (-) False XLOC_023263
TCONS_00047147 lncRNA downstream 202631 5805398 ~ 5837398 (-) True XLOC_023263
TCONS_00047149 lncRNA downstream 203315 5815995 ~ 5836714 (-) True XLOC_023265
TCONS_00047148 lncRNA downstream 215903 5809520 ~ 5824126 (-) True XLOC_023264
TCONS_00047145 lncRNA downstream 234184 5793087 ~ 5805845 (-) True XLOC_023262
TCONS_00047150 lncRNA upstream 10050 6088272 ~ 6101120 (-) True XLOC_023272
TCONS_00046039 lncRNA upstream 213371 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00047151 lncRNA upstream 528890 6607112 ~ 6647264 (-) False XLOC_023279
TCONS_00046050 lncRNA upstream 566208 6644430 ~ 6647199 (-) True XLOC_023279
TCONS_00046062 lncRNA upstream 1495588 7573810 ~ 7577760 (-) True XLOC_023285
TCONS_00046029 mRNA downstream 1956 6035995 ~ 6038073 (-) True XLOC_023270
TCONS_00046028 mRNA downstream 2004 6034990 ~ 6038025 (-) False XLOC_023270
TCONS_00046027 mRNA downstream 10715 6025538 ~ 6029314 (-) True XLOC_023269
TCONS_00046026 mRNA downstream 15563 6015299 ~ 6024466 (-) True XLOC_023268
TCONS_00046024 mRNA downstream 106947 5915895 ~ 5933082 (-) False XLOC_023267
TCONS_00046031 mRNA upstream 15942 6094164 ~ 6096557 (-) True XLOC_023273
TCONS_00046032 mRNA upstream 54925 6133147 ~ 6158933 (-) False XLOC_023274
TCONS_00046035 mRNA upstream 82815 6161037 ~ 6258869 (-) False XLOC_023275
TCONS_00046034 mRNA upstream 82815 6161037 ~ 6258869 (-) False XLOC_023275
TCONS_00046036 mRNA upstream 83046 6161268 ~ 6260333 (-) True XLOC_023275
TCONS_00046012 other downstream 1274345 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046009 other downstream 1721736 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00045986 other downstream 3120508 2919405 ~ 2919521 (-) True XLOC_023236
TCONS_00045981 other downstream 3350835 2689078 ~ 2689194 (-) True XLOC_023231
TCONS_00045948 other downstream 5045899 994016 ~ 994130 (-) True XLOC_023218
TCONS_00046033 other upstream 79883 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046037 other upstream 208377 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046038 other upstream 213371 6291593 ~ 6342897 (-) False XLOC_023276
TCONS_00046055 other upstream 693086 6771308 ~ 6772377 (-) True XLOC_023283
TCONS_00046060 other upstream 1485139 7563361 ~ 7564846 (-) False XLOC_023285

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000327_00004752_00017724.mRNA True 2015 mRNA 0.41 8 CI01000327 3729 ~ 17724 (-)