RNA id: XM_021568778.2


Basic Information

Item Value
RNA id XM_021568778.2
length 5198
RNA type mRNA
GC content 0.51
exon number 32
gene id LOC110494076
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 52810158 ~ 52974852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGGATCCGTCATCCAGTGAGGAGGAATCGGATGGTgggatggtggaggaggaacaCCATCACAAGGAGGCATCGGCACCCCAGAGCGGAGCCCGCATCTCTCCAAGCCGGACCAGCGAGAGCTCCGGCGGTCTTGCGCCCAGCAGCAGCCGCAGTAGCGCTCGCCCGACCAGCCCGAGCCCGTCAGCTGCCAGCGAGcaggagaaggtagaggaggcGAATTTGcagaaggaagaagaggagcgCAAAAAGAAGTTGCAACTATATGTATTTGTGATGCGGTGCATTGCATACCCTTTCAATGCAAAACAGCCCACCGATATGGCGAGACGACAACAGAAGATCACAGAGCAGCAGCTCCGGCAGACCAACGACCGCTTCAAAGCTTTCCTCAATGGAGACACCCAGATAGTGGCTGATGAAGCGTTCATCAACGCTGTCCAGAGCTACTATGAgGTGTTCCTGAAAAGCGACCGCGTTGCCAAGATGGTGCAGAGCGGGGGCTTCTCAGCCAATGACTGCAGGGAGGTGTTCAAGAGGCACATCGAGAAGCGTGTCCGCAGCCTGCCTGAGATCGACGGCCTGAGTAAGGAGACGGTGCTCAGCTCCTGGATGGCCAAGTTCGACACCATCTACCGCGGGGACGAGGACCCACGCAAGGCTCAGCAACGCATGACGGCTAGTGCAGCCTCTGAGCTCATCCTCAGCAAGGACCAGCTCTACGAGATGTTCCAGAACATTCTGGGTATCAAGAAGTTTGAGCACCAGCTGCTCTACAACGCCTGCCAGTTGGACAACCTGGACGAGCAGGCTGCCCAGATCCGACGGGAGCTGGATGGACGTCTGCAGATGGCCGATCAGATTGCCAGGgGAGGCAAATTCCCCAAGTTTGTGTCGAAGGAAATGGAGCAGATGTACATAGAGGAGCTGAAGGCGTCGGTGAACCAGCTGATGGCCAACCTGGAGAGCATGCCCGTGTCCAAGGGAGGAGAGTTCAAACTGCAGAAGCTGAAGAAAGGACACAACACCTCCATCATGGACATGGGTCAGGAGGACGAGAACACACTGTCCAAGTCTGATGTGGTGCTCTCCTTTACTCTGGAGGTAGTGATCATGGAGGTGGTGGGCCTGAAGTCTCTGGCTCCTAACAGGATTGTTTACTGCAccatggaggtggagggaggggagaaactgCAGACAGACCAGGCTGAGGCCTCCAAGCCAACctGGGGAACCCAGGGAGACTTCACCACCACACACCCCCTCCCTGCCGTCAAGGTGAAACTGTTTACAGAAAGCACTGGAGTGCTGGCCCTGGAGGATAAAGAGCTGGGCAGGGTGGTCCTCCACCCAACCCCTAACAGCCCCAAGGCATCAGAGCTCCATAAGATGGCCCTCACCAAGGCCTGCCCCGACCAGAACCTTCAGATCAAACTGGCCATTCGCATGGACAAACCACAGAACATGAAGCATTCTGGGTATTTGTGGGCTTTTGGGAAGAACGTCTGGAAGCGCTGGAAGAAGCGTTTCTTCGTCCTCGTGCAGGTGAGCCAGTACACCTTTGCCATGTGCAGCTACAGAGAGAAGAAGTCTGAGCCACAGGAGCTGCTACAGCTGGATGGTTACACTGTGGACTACACCGACCCCCAGCCaggatTGGATGGCGGCAGGGCGTTCTTCAACGCGGTGAAGGAGGGCGACACTGTGATCTTTGCCAGTGATGACGAGCAGGACCGCATCCTGTGGGTTCAGGCAATGTACCGGGCCACCGGTCAGTCCCACAAGCCTGTTCCCCCCACCCAGGTCCAGAAACTAAACTCCAAGGGGGGTGCCGCCGCTCAGATGGACGCGCCCATCTCCCAGTTCTCTGGACTTAAGGACGCAGACAGAGCTCAGAAACATGGCATGGATGAGTTTATCTCGGCTAACCCCTGTAGCTTTGACCACGCCTCCCTGTTCGAGATCGTCCAGAGGCTTACGTTGGACCACAGGCTCAATGACACCTTCTGCTGCCTGGGATGGTTCAGCCCAGGCCAGGTGTTTGTCCTGGATGAGTACTGTGCCAGGAACGGCGTGCGGGGGTGTCACAGACACCTGGGTTACCTAGGGGACCTGCTGGAGAGGGCGGACAGAGGAGCCATGATCGACCCCACCCTGCTTCACTACAGCTTCGCTTTCTGCGCCTCCCATGTCCACGGTAACAGGCCTGACGGACTGGGAACAGTGAAGGTGGATGAAAAGGAGCGCTTTGAAGAAATCAAAGAGCGATTGCGTGTGATCCTGGAACACCAGATCACTAACTTCAGATATTGCTTCCCGTTCGGACGTCCAGAGGGAGCCTTGAAGGCCACGCTGTCTTTGCTGGAAAGGGTGCTGATGAAGGACATTGTGACTCCAGTTCCACAAGAGGAAGTGAAGGGAGTCATCCGTAAATGCCTGGAGCAGGCTGCACAGCTCAACTACGCTAAAATCACAGAGTACGCCAAAATCGAAGtTGAGAAAGATAAAAAGCCGGATCCAAATGATCCAGagaacgtagGCCGGTTAGTCACGCCCGCCAAAAAACTCGAGGACACTATTCGCCTGGCCGAGCTAGTCATAGAGGTCCTTCAGCAGAACCAGGAGCATCATGCGGAGGCTGCAGTCACAAGTTCTGGAGATCAATCGGGCAAAGAGgCCTTTGCCTGGTGGTCTGACCTGATGACGGAGCACGCTGAGACCTTCCTGGCTATGTACGCCGTGGATATGGACGCTGCTCTGGAAATCCAGTCTCCTGAGAGCTGGGACAGCTTCCCTCTCTTCCAGCTGCTCAACGACTTCCTCCGCACTGACTATCACCTGTGCAATGGGAAATTCCACAAACACCTGCAGGACCTCTATGCTCCCCTGGTGGTTAGATATGTAGACCTGATGGAGTCCTCCATCGCTCAGTCTATCACCAGGGGCTTTGAGGGAGAGTCCTGGGTGCCTGTAAAGAGTTTGACAAGTAATCTGCCCAATGTGAATCTCCAAATACCAAATGTCAACCTCCAAATTCCCAAAGTACCAAATCTGCCGCCAGTAGCAGGACTATCAGTTAACCTTCCAACAATGCCTAGTTTTTCCACCCCGACATGGATGGCTGCCATCTATGACCCTGACAATGGCTCTGGGACGTCGGAGGACCTGTTCTGGAAGCTGGAGGCCCTACAGACCTTCATCAGGGACCTACACTGGCCCGAGGAGGAGTTCGCCAAACACCTGGAGAACCGCATGAAGCTCATGTCCAGCGACATGATTGAGAATTGCGtcaaacgCACTAGGATGGCATTTGAGTCCAAGCTGGCAAAGAGCAGCAGGGGTACAGACTTCCGCATCTCCGCAGCAATATGCACCATGTTCAATGTGATGGTGGACGCAAAGGACCAGTCTTCCAAGCTGTGTGCCATGGAGATGGGCCAGGAGAAACAGTATCACACCCAGATAGATGAACTGATTGAGGAGAGTGTAAAGGACATGATCCAACTCATGGTGGCAAAGTTTGTGGTTATTCTGGAGTGTCTGTTGGCCAAGATCTCCCGATACGATGAAGGCACTCTATTCTCATCCTTCATGTCATTCACGGTGAAAGCTGCCTCAAAGTATGTGGACGTCCCTAAGCCTGGGATGGACGTTGCAGACGGTTATGTCACCTGTGTCCGCCATTCTCAGGACATTCTACGAGATAAGGTCAATGAGGAGGTGTATATAGAAAGGTTATTTGATcAATGGTACACAGCCACCATGAACCTACTGGGGACCTGGCTCACTGAGCGCATGGACCAGCAGCTCCATCTCTACCAGCTCAAGATCCTCATCAGGATCGTCAAGAAAAAGTACCGTGACTTCCGTCTGCAGGGGGTGCTAGACTCCACCCTGAACAGTAAGATGTATGACACTGTGAGGAACAGGCTGACCCTGGAGGAGGCCAACGCATCCATGAAAGAGGGAGGCATGGGGGGCATCTCCATGAAGGACAGCGACGAAGAGGACGAAGACGATGACTAGAGTTGCAGCGCCGCCCGACCTCAGAACTGGCACCGACACCtccctttacccccccccccccgatcctCTACTCACATGACTTAGCCTGGTAACCAATGCATGTACCAACTCTGTTACTCAGACAGACACTTTAGGTCCTCTTTGTCATCTTAAAGTGCCCATGAAGGACctataataaacaataaaaatagtAATTACTATACTGaggaaaaataatacaaataaatatgttGAAAAAATAAACCATGAATGACAGTTTAGCTGTGTCATGATGAAGATAGCACTGATGATATCTTTGACTCATTGATTTCTAAATTCATTTCTGTGTTCCTAAGCAATATGGAGTACCATTTGTTTGACAATGTTGAGTGAGATTATTAGGTGTGTCCCTGTCCAATGCAAACCTATATCGCGCTTCTTTGTTGTATTCTACATTCATTATAATGGTACATTGTTGTGACGATGAGTGTATAGACCCTTTTCTTTGTATTGACTATCTTTAAGTGGATGCCAACTGCTTCAAACTGAAAATGACCCTCTGTATTTAAGTTCAATGCTGTTTAGGATAAGCATCTCGTCTACTCACTCTACTGTACTCTCAGCACCATAGTATGTTCTAGACCGTCTGTCCCTCATCTGTGTCAATGCTCTGTGACCTCATAATCTTTCACCCTATCACTAACGAGACATTGTCCAGCAGCCATCTTGAACTAAAATGAGTGGGTATTCTGGAAATGCAATATTCTCAAAGCTCCATTTTGATATCTTGGAGATTTATATTTTTCTTTCTACATTGTTGAAACGACCTTGATACAGGTTCTAATCTATTTGAAATTTAGTTGCACgtttacagagaaaagagagctgaaaataaaagttttttttatttaccaaAATGAAAGTTGGTCTGTCTTTTTAGTTTTATTACGTACTTGATTAGAATGAGAtgtgtggcatttctttgggtcTCACTGTTGTTTTGTATATACACCGCTGTACATTGCATTCTGAGCCAACGCTGCATGCCCGTGGGTCCCCACCCTCTCCGAATGCTTTCCGTTTTGTGTGAAAATTAGCTGGTGGATTAATTCTTGCTTTTGCCTTATGAAAGCCAACAGTTGTAATATGCAAGAGCTGTGGCCTCTAAATAAAATGACTGTACAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1672949 lncRNA upstream 29788 52780408 ~ 52780630 (+) True G1462399
TU1672712 lncRNA upstream 87751 52722280 ~ 52722667 (+) True G1462172
TU1672699 lncRNA upstream 104835 52705323 ~ 52705583 (+) True G1462159
TU1672559 lncRNA upstream 306544 52503175 ~ 52503874 (+) True G1462021
TU1672481 lncRNA upstream 387408 52422168 ~ 52423010 (+) True G1461948
TU1673332 lncRNA downstream 306962 53281814 ~ 53317652 (+) True G1462765
TU1673498 lncRNA downstream 555583 53530435 ~ 53530686 (+) True G1462923
TU1673509 lncRNA downstream 568399 53543251 ~ 53545720 (+) False G1462930
TU1673506 lncRNA downstream 568453 53543305 ~ 53545720 (+) False G1462930
TU1673512 lncRNA downstream 568453 53543305 ~ 53545720 (+) False G1462930
XM_021568772.2 mRNA upstream 58236 52731398 ~ 52752182 (+) True LOC110494075
XM_021568769.2 mRNA upstream 110786 52639622 ~ 52699632 (+) True LOC110494073
XM_021568768.2 mRNA upstream 310874 52493771 ~ 52499544 (+) True LOC110494072
XM_021568766.2 mRNA upstream 355555 52444715 ~ 52454863 (+) False zgc:113307
XM_021568790.2 mRNA downstream 493283 53468135 ~ 53522586 (+) True cfap20dc
XM_021568791.2 mRNA downstream 551365 53526217 ~ 53530187 (+) True LOC110494082
XM_036950124.1 mRNA downstream 556404 53531256 ~ 53542954 (+) False LOC110494083
XM_021568792.2 mRNA downstream 556419 53531271 ~ 53542953 (+) False LOC110494083
XM_036950123.1 mRNA downstream 564902 53539754 ~ 53542953 (+) True LOC110494083
TU1670644 other upstream 1719529 51080132 ~ 51090889 (+) False G1460249
TU1670568 other upstream 1912974 50894940 ~ 50897444 (+) True LOC110494047
TU1670065 other upstream 2033346 50776529 ~ 50777072 (+) True G1459769
TU1669855 other upstream 2374712 50430807 ~ 50435706 (+) False atxn7l2a
TU1669722 other upstream 2626722 50181165 ~ 50183696 (+) True LOC110494957
TU1674769 other downstream 1199162 54174014 ~ 54189617 (+) True G1464092
TU1674872 other downstream 1281529 54256381 ~ 54264616 (+) True LOC110494100
TU1674965 other downstream 1496853 54471705 ~ 54474472 (+) False LOC110494110
TU1674964 other downstream 1497093 54471945 ~ 54473872 (+) True LOC110494110
TU1676946 other downstream 3021796 55996648 ~ 55998174 (+) False G1466124

Expression Profile